Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CDX1P47902 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CDX1P47902 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC14.72□□□□□ -0.05
CDX1P47902 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CDX1P47902 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CDX1P47902 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC14.72□□□□□ -0.05
CDX1P47902 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CDX1P47902 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
CDX1P47902 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CDX1P47902 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
CDX1P47902 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CDX1P47902 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
CDX1P47902 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CDX1P47902 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
CDX1P47902 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
CDX1P47902 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC14.72□□□□□ -0.05
CDX1P47902 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
CDX1P47902 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC14.71□□□□□ -0.05
CDX1P47902 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 GAS2L1P1-201ENST00000420145 1480 ntBASIC14.71□□□□□ -0.05
CDX1P47902 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC14.71□□□□□ -0.05
CDX1P47902 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC14.71□□□□□ -0.05
CDX1P47902 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC14.71□□□□□ -0.05
CDX1P47902 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC14.71□□□□□ -0.05
CDX1P47902 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CDX1P47902 AL590326.2-201ENST00000625139 305 ntBASIC14.71□□□□□ -0.05
CDX1P47902 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC14.71□□□□□ -0.05
CDX1P47902 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
CDX1P47902 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
CDX1P47902 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.71□□□□□ -0.06
CDX1P47902 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CDX1P47902 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.71□□□□□ -0.06
CDX1P47902 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
CDX1P47902 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC14.71□□□□□ -0.06
CDX1P47902 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC14.71□□□□□ -0.06
CDX1P47902 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
CDX1P47902 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC14.71□□□□□ -0.06
CDX1P47902 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.71□□□□□ -0.06
CDX1P47902 HR-201ENST00000312841 5351 ntTSL 5 BASIC14.7□□□□□ -0.06
CDX1P47902 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC14.7□□□□□ -0.06
CDX1P47902 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
CDX1P47902 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14.7□□□□□ -0.06
CDX1P47902 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
CDX1P47902 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC14.7□□□□□ -0.06
CDX1P47902 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
CDX1P47902 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC14.7□□□□□ -0.06
CDX1P47902 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
CDX1P47902 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
CDX1P47902 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC14.7□□□□□ -0.06
CDX1P47902 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC14.7□□□□□ -0.06
CDX1P47902 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
CDX1P47902 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC14.7□□□□□ -0.06
CDX1P47902 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC14.7□□□□□ -0.06
CDX1P47902 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC14.7□□□□□ -0.06
CDX1P47902 AL138966.2-201ENST00000621997 464 ntBASIC14.7□□□□□ -0.06
CDX1P47902 AL031432.5-201ENST00000641059 760 ntBASIC14.7□□□□□ -0.06
CDX1P47902 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.7□□□□□ -0.06
CDX1P47902 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC14.7□□□□□ -0.06
CDX1P47902 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC14.7□□□□□ -0.06
CDX1P47902 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
CDX1P47902 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
CDX1P47902 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms