Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VIMP08670 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
VIMP08670 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VIMP08670 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VIMP08670 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.12■□□□□ 0.49
VIMP08670 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
VIMP08670 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
VIMP08670 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
VIMP08670 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.11■□□□□ 0.49
VIMP08670 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC18.11■□□□□ 0.49
VIMP08670 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
VIMP08670 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC18.11■□□□□ 0.49
VIMP08670 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
VIMP08670 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VIMP08670 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.11■□□□□ 0.49
VIMP08670 AF201337.1-201ENST00000520239 748 ntBASIC18.11■□□□□ 0.49
VIMP08670 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.11■□□□□ 0.49
VIMP08670 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.11■□□□□ 0.49
VIMP08670 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VIMP08670 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.11■□□□□ 0.49
VIMP08670 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
VIMP08670 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.11■□□□□ 0.49
VIMP08670 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
VIMP08670 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VIMP08670 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
VIMP08670 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.1■□□□□ 0.49
VIMP08670 AC106886.4-201ENST00000623557 2502 ntBASIC18.1■□□□□ 0.49
VIMP08670 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
VIMP08670 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.1■□□□□ 0.49
VIMP08670 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.1■□□□□ 0.49
VIMP08670 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
VIMP08670 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.1■□□□□ 0.49
VIMP08670 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.1■□□□□ 0.49
VIMP08670 AP000593.1-201ENST00000393668 712 ntBASIC18.1■□□□□ 0.49
VIMP08670 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.1■□□□□ 0.49
VIMP08670 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.1■□□□□ 0.49
VIMP08670 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 PKD1P5-201ENST00000532415 10291 ntBASIC18.1■□□□□ 0.49
VIMP08670 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VIMP08670 PCDHA14-201ENST00000506751 2298 ntBASIC18.1■□□□□ 0.49
VIMP08670 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
VIMP08670 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.1■□□□□ 0.49
VIMP08670 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.1■□□□□ 0.49
VIMP08670 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VIMP08670 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
VIMP08670 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.09■□□□□ 0.49
VIMP08670 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.09■□□□□ 0.49
VIMP08670 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
VIMP08670 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.09■□□□□ 0.49
VIMP08670 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.09■□□□□ 0.49
VIMP08670 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
VIMP08670 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VIMP08670 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
VIMP08670 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.09■□□□□ 0.49
VIMP08670 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms