Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC092437.1-201ENST00000624794 1048 ntBASIC13.19□□□□□ -0.3
SMKR1H3BMG3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC13.19□□□□□ -0.3
SMKR1H3BMG3 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 KRT18P41-201ENST00000518924 1277 ntBASIC13.18□□□□□ -0.3
SMKR1H3BMG3 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 AC060766.5-201ENST00000590539 871 ntBASIC13.18□□□□□ -0.3
SMKR1H3BMG3 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 AC092118.2-201ENST00000613495 667 ntBASIC13.18□□□□□ -0.3
SMKR1H3BMG3 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
SMKR1H3BMG3 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC13.17□□□□□ -0.3
SMKR1H3BMG3 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC13.17□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms