Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 AL157888.1-201ENST00000631930 593 ntBASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.68■□□□□ 0.42
PCDHB3Q9Y5E6 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 GNAS-203ENST00000306120 1878 ntBASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 HLA-F-220ENST00000434407 884 ntBASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 MIR3652-201ENST00000579335 131 ntBASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDHB3Q9Y5E6 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 BX276092.5-203ENST00000456199 560 ntBASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 MIR3180-4-201ENST00000582223 153 ntBASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 AC092329.2-201ENST00000598402 547 ntBASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 AC010240.3-201ENST00000607688 395 ntBASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDHB3Q9Y5E6 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 LINC00896-202ENST00000609602 2128 ntBASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 PRELID1P1-202ENST00000567272 903 ntBASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 AL136038.4-201ENST00000603606 1261 ntBASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 AL121672.3-201ENST00000608644 468 ntBASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 AC079602.3-201ENST00000623931 403 ntBASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.65■□□□□ 0.42
PCDHB3Q9Y5E6 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms