Protein–RNA interactions for Protein: Q9Y3T6

R3HCC1, R3H and coiled-coil domain-containing protein 1, humanhuman

Known RBP Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1Q9Y3T6 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.67■□□□□ 0.9
R3HCC1Q9Y3T6 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 MMP23A-201ENST00000234610 1017 ntBASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 TSPY21P-201ENST00000433481 731 ntBASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 BX088651.1-201ENST00000540551 451 ntBASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 KRT8P41-201ENST00000533985 1514 ntBASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
R3HCC1Q9Y3T6 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 MESTP1-201ENST00000404287 994 ntBASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 AC073912.3-201ENST00000624414 853 ntBASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 PP12613-201ENST00000424958 2230 ntBASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
R3HCC1Q9Y3T6 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
R3HCC1Q9Y3T6 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.64■□□□□ 0.9
R3HCC1Q9Y3T6 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
R3HCC1Q9Y3T6 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
R3HCC1Q9Y3T6 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.9
R3HCC1Q9Y3T6 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
R3HCC1Q9Y3T6 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
R3HCC1Q9Y3T6 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 PRSS44-201ENST00000515154 1146 ntBASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
R3HCC1Q9Y3T6 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms