Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 AC139887.4-201ENST00000607877 719 ntBASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.95■□□□□ 0.46
VPS9D1Q9Y2B5 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 AC132938.6-201ENST00000623828 1655 ntBASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 KRT18P48-201ENST00000434763 852 ntBASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 AC092068.1-201ENST00000592525 454 ntTSL 2 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.94■□□□□ 0.46
VPS9D1Q9Y2B5 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 LETM1P2-201ENST00000597330 2178 ntBASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 AL133373.2-201ENST00000623187 2828 ntBASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 LINC00167-201ENST00000530583 1419 ntBASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 YIPF7-202ENST00000415895 1196 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 TSPY5P-201ENST00000426936 936 ntBASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 AC117947.1-201ENST00000427448 529 ntBASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 HLA-F-220ENST00000434407 884 ntBASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 AC116407.2-201ENST00000613639 860 ntBASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
VPS9D1Q9Y2B5 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
VPS9D1Q9Y2B5 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
VPS9D1Q9Y2B5 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
VPS9D1Q9Y2B5 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
VPS9D1Q9Y2B5 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.92■□□□□ 0.46
VPS9D1Q9Y2B5 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
VPS9D1Q9Y2B5 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.92■□□□□ 0.46
VPS9D1Q9Y2B5 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms