Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 PVRIG2P-201ENST00000435460 978 ntBASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 AC128688.1-201ENST00000487626 519 ntBASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 NEK4P2-201ENST00000580004 1012 ntBASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.7■□□□□ 0.74
LIMA1Q9UHB6 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 SNORA78-201ENST00000459373 127 ntBASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 KRT17P2-201ENST00000300992 1314 ntBASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
LIMA1Q9UHB6 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 TSPY15P-201ENST00000457163 923 ntBASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 FAM87A-204ENST00000613235 858 ntBASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 AC092865.7-201ENST00000641832 219 ntBASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 AC012313.1-201ENST00000593393 3059 ntBASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 HLA-J-201ENST00000462773 1622 ntBASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.68■□□□□ 0.74
LIMA1Q9UHB6 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 CROCCP2-202ENST00000412962 2773 ntBASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LIMA1Q9UHB6 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms