Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
USP29Q9HBJ7 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
USP29Q9HBJ7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.58■□□□□ 0.57
USP29Q9HBJ7 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USP29Q9HBJ7 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
USP29Q9HBJ7 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
USP29Q9HBJ7 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 PVRIG2P-201ENST00000435460 978 ntBASIC18.58■□□□□ 0.56
USP29Q9HBJ7 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 KRT18P56-201ENST00000507275 550 ntBASIC18.58■□□□□ 0.56
USP29Q9HBJ7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
USP29Q9HBJ7 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 AL359075.1-203ENST00000462729 1002 ntBASIC18.57■□□□□ 0.56
USP29Q9HBJ7 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 GCSHP2-201ENST00000560971 527 ntBASIC18.57■□□□□ 0.56
USP29Q9HBJ7 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
USP29Q9HBJ7 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 AL136038.3-201ENST00000561909 1096 ntBASIC18.56■□□□□ 0.56
USP29Q9HBJ7 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 LINC00167-201ENST00000530583 1419 ntBASIC18.56■□□□□ 0.56
USP29Q9HBJ7 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
USP29Q9HBJ7 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 STARP1-201ENST00000397973 869 ntBASIC18.55■□□□□ 0.56
USP29Q9HBJ7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.55■□□□□ 0.56
USP29Q9HBJ7 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 AC116407.4-201ENST00000623319 1061 ntBASIC18.55■□□□□ 0.56
USP29Q9HBJ7 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USP29Q9HBJ7 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms