Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LMX1AQ8TE12 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 AC132938.6-201ENST00000623828 1655 ntBASIC17.52■□□□□ 0.4
LMX1AQ8TE12 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LMX1AQ8TE12 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LMX1AQ8TE12 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
LMX1AQ8TE12 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LMX1AQ8TE12 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.52■□□□□ 0.39
LMX1AQ8TE12 AC243591.1-201ENST00000452967 1364 ntBASIC17.52■□□□□ 0.39
LMX1AQ8TE12 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
LMX1AQ8TE12 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 RPS2P28-201ENST00000314255 741 ntBASIC17.51■□□□□ 0.39
LMX1AQ8TE12 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 HNRNPDP1-201ENST00000439535 754 ntBASIC17.51■□□□□ 0.39
LMX1AQ8TE12 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 MIR7706-201ENST00000613747 67 ntBASIC17.51■□□□□ 0.39
LMX1AQ8TE12 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.51■□□□□ 0.39
LMX1AQ8TE12 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 FAM215A-202ENST00000632077 792 ntBASIC17.51■□□□□ 0.39
LMX1AQ8TE12 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.51■□□□□ 0.39
LMX1AQ8TE12 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.51■□□□□ 0.39
LMX1AQ8TE12 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 SART3-203ENST00000546611 1184 ntBASIC17.5■□□□□ 0.39
LMX1AQ8TE12 AC139887.3-201ENST00000568585 713 ntBASIC17.5■□□□□ 0.39
LMX1AQ8TE12 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 AL671883.3-201ENST00000603274 991 ntBASIC17.5■□□□□ 0.39
LMX1AQ8TE12 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
LMX1AQ8TE12 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.49■□□□□ 0.39
LMX1AQ8TE12 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms