Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 AP002414.1-201ENST00000391405 1147 ntBASIC21.3■■□□□ 1
SMC1BQ8NDV3 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.3■■□□□ 1
SMC1BQ8NDV3 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 AC022145.2-201ENST00000598203 171 ntBASIC21.3■■□□□ 1
SMC1BQ8NDV3 AL353135.1-201ENST00000606729 504 ntBASIC21.3■■□□□ 1
SMC1BQ8NDV3 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC21.3■■□□□ 1
SMC1BQ8NDV3 AC010507.1-201ENST00000633895 436 ntBASIC21.3■■□□□ 1
SMC1BQ8NDV3 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMC1BQ8NDV3 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
SMC1BQ8NDV3 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 FEM1AP3-201ENST00000403722 1741 ntBASIC21.29■■□□□ 1
SMC1BQ8NDV3 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
SMC1BQ8NDV3 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
SMC1BQ8NDV3 MIR661-201ENST00000384842 89 ntBASIC21.29■■□□□ 1
SMC1BQ8NDV3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC21.29■■□□□ 1
SMC1BQ8NDV3 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SMC1BQ8NDV3 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.29■■□□□ 1
SMC1BQ8NDV3 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC21.29■■□□□ 1
SMC1BQ8NDV3 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC21.29■■□□□ 1
SMC1BQ8NDV3 AC010654.1-201ENST00000615722 808 ntBASIC21.29■■□□□ 1
SMC1BQ8NDV3 AL358472.5-202ENST00000641448 1267 ntBASIC21.29■■□□□ 1
SMC1BQ8NDV3 AC092902.6-201ENST00000641783 218 ntBASIC21.29■■□□□ 1
SMC1BQ8NDV3 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SMC1BQ8NDV3 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.29■■□□□ 1
SMC1BQ8NDV3 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
SMC1BQ8NDV3 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
SMC1BQ8NDV3 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.28■■□□□ 1
SMC1BQ8NDV3 PC-214ENST00000628663 1470 ntTSL 5 BASIC21.28■■□□□ 1
SMC1BQ8NDV3 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.28■■□□□ 1
SMC1BQ8NDV3 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.28■■□□□ 1
SMC1BQ8NDV3 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC21.28■■□□□ 1
SMC1BQ8NDV3 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC21.28■■□□□ 1
SMC1BQ8NDV3 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC21.28■■□□□ 1
SMC1BQ8NDV3 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.28■■□□□ 1
SMC1BQ8NDV3 AC055876.3-201ENST00000431496 288 ntBASIC21.28■■□□□ 1
SMC1BQ8NDV3 FAM207CP-201ENST00000443486 507 ntBASIC21.28■■□□□ 1
SMC1BQ8NDV3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
SMC1BQ8NDV3 RPS15P9-201ENST00000494093 319 ntBASIC21.28■■□□□ 1
SMC1BQ8NDV3 KRT18P41-201ENST00000518924 1277 ntBASIC21.28■■□□□ 1
SMC1BQ8NDV3 AP005018.1-201ENST00000525475 301 ntBASIC21.28■■□□□ 1
SMC1BQ8NDV3 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC21.28■■□□□ 1
SMC1BQ8NDV3 AC138649.4-201ENST00000612222 287 ntBASIC21.28■■□□□ 1
SMC1BQ8NDV3 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SMC1BQ8NDV3 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
SMC1BQ8NDV3 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC21.28■■□□□ 1
SMC1BQ8NDV3 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
SMC1BQ8NDV3 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SMC1BQ8NDV3 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SMC1BQ8NDV3 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
SMC1BQ8NDV3 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 KRT8P47-201ENST00000604727 1398 ntBASIC21.27■■□□□ 1
SMC1BQ8NDV3 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 DDX43P3-201ENST00000441064 443 ntBASIC21.27■■□□□ 1
SMC1BQ8NDV3 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SMC1BQ8NDV3 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
SMC1BQ8NDV3 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.27■■□□□ 1
SMC1BQ8NDV3 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
SMC1BQ8NDV3 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC21.27■□□□□ 0.99
SMC1BQ8NDV3 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SMC1BQ8NDV3 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SMC1BQ8NDV3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 AL121761.2-201ENST00000598007 1648 ntBASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 SPDYE21P-201ENST00000413323 827 ntBASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 REXO1L3P-201ENST00000622202 1288 ntBASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms