Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CCDC60Q8IWA6 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC60Q8IWA6 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC60Q8IWA6 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC60Q8IWA6 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC60Q8IWA6 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20■□□□□ 0.79
CCDC60Q8IWA6 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CCDC60Q8IWA6 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 TP73-AS1-207ENST00000624167 988 ntBASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC60Q8IWA6 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
CCDC60Q8IWA6 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 REXO1L9P-201ENST00000604264 2108 ntBASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 SLC25A6P4-201ENST00000586535 553 ntBASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 AP001269.4-201ENST00000609611 512 ntBASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC60Q8IWA6 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC60Q8IWA6 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
CCDC60Q8IWA6 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC60Q8IWA6 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC60Q8IWA6 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms