Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 COX5BP2-201ENST00000392354 334 ntBASIC23.86■■□□□ 1.41
USP54Q70EL1 MIR940-201ENST00000401276 94 ntBASIC23.86■■□□□ 1.41
USP54Q70EL1 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC23.86■■□□□ 1.41
USP54Q70EL1 S100A2-206ENST00000497140 697 ntTSL 2 BASIC23.86■■□□□ 1.41
USP54Q70EL1 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC23.86■■□□□ 1.41
USP54Q70EL1 AC010654.1-201ENST00000615722 808 ntBASIC23.86■■□□□ 1.41
USP54Q70EL1 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 AC093677.2-201ENST00000600169 1863 ntBASIC23.86■■□□□ 1.41
USP54Q70EL1 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC23.86■■□□□ 1.41
USP54Q70EL1 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
USP54Q70EL1 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC23.86■■□□□ 1.41
USP54Q70EL1 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC23.86■■□□□ 1.41
USP54Q70EL1 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 MCCD1P2-201ENST00000423228 335 ntBASIC23.86■■□□□ 1.41
USP54Q70EL1 PMS2P2-201ENST00000425039 1128 ntBASIC23.86■■□□□ 1.41
USP54Q70EL1 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC23.86■■□□□ 1.41
USP54Q70EL1 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC23.86■■□□□ 1.41
USP54Q70EL1 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC23.86■■□□□ 1.41
USP54Q70EL1 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
USP54Q70EL1 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC23.86■■□□□ 1.41
USP54Q70EL1 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
USP54Q70EL1 AC100803.2-201ENST00000562459 1963 ntBASIC23.85■■□□□ 1.41
USP54Q70EL1 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
USP54Q70EL1 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC23.85■■□□□ 1.41
USP54Q70EL1 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
USP54Q70EL1 COA5-202ENST00000409997 557 ntTSL 4 BASIC23.85■■□□□ 1.41
USP54Q70EL1 HMGN1P19-201ENST00000436976 333 ntBASIC23.85■■□□□ 1.41
USP54Q70EL1 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC23.85■■□□□ 1.41
USP54Q70EL1 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC23.85■■□□□ 1.41
USP54Q70EL1 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC23.85■■□□□ 1.41
USP54Q70EL1 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC23.85■■□□□ 1.41
USP54Q70EL1 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC23.84■■□□□ 1.41
USP54Q70EL1 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC23.84■■□□□ 1.41
USP54Q70EL1 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC23.84■■□□□ 1.41
USP54Q70EL1 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
USP54Q70EL1 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
USP54Q70EL1 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
USP54Q70EL1 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
USP54Q70EL1 HCG4B-203ENST00000450128 991 ntBASIC23.84■■□□□ 1.41
USP54Q70EL1 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
USP54Q70EL1 DHDH-204ENST00000523250 634 ntTSL 5 BASIC23.84■■□□□ 1.41
USP54Q70EL1 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC23.84■■□□□ 1.41
USP54Q70EL1 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC23.84■■□□□ 1.41
USP54Q70EL1 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC23.84■■□□□ 1.41
USP54Q70EL1 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
USP54Q70EL1 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC23.84■■□□□ 1.41
USP54Q70EL1 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC23.84■■□□□ 1.41
USP54Q70EL1 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC23.84■■□□□ 1.41
USP54Q70EL1 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC23.84■■□□□ 1.41
USP54Q70EL1 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
USP54Q70EL1 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
USP54Q70EL1 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
USP54Q70EL1 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
USP54Q70EL1 IGLL3P-201ENST00000412472 434 ntBASIC23.83■■□□□ 1.41
USP54Q70EL1 DNAJB3-202ENST00000449667 1266 ntBASIC23.83■■□□□ 1.41
USP54Q70EL1 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
USP54Q70EL1 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC23.83■■□□□ 1.41
USP54Q70EL1 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC23.83■■□□□ 1.41
USP54Q70EL1 AC009336.1-201ENST00000608941 1553 ntBASIC23.83■■□□□ 1.41
USP54Q70EL1 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
USP54Q70EL1 BX276092.7-203ENST00000637198 1536 ntBASIC23.83■■□□□ 1.4
USP54Q70EL1 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.4
USP54Q70EL1 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
USP54Q70EL1 GPR89P-201ENST00000407924 1495 ntBASIC23.83■■□□□ 1.4
USP54Q70EL1 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC23.83■■□□□ 1.4
USP54Q70EL1 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.4
USP54Q70EL1 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC23.83■■□□□ 1.4
USP54Q70EL1 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC23.83■■□□□ 1.4
USP54Q70EL1 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.4
USP54Q70EL1 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC23.83■■□□□ 1.4
USP54Q70EL1 CYB561-217ENST00000582997 877 ntTSL 5 BASIC23.83■■□□□ 1.4
USP54Q70EL1 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 AC018445.3-201ENST00000624177 1945 ntBASIC23.82■■□□□ 1.4
USP54Q70EL1 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC23.82■■□□□ 1.4
USP54Q70EL1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC23.82■■□□□ 1.4
USP54Q70EL1 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC23.82■■□□□ 1.4
USP54Q70EL1 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
USP54Q70EL1 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC23.82■■□□□ 1.4
USP54Q70EL1 COX5A-206ENST00000568783 571 ntTSL 3 BASIC23.82■■□□□ 1.4
USP54Q70EL1 STK25P1-201ENST00000585406 838 ntBASIC23.82■■□□□ 1.4
USP54Q70EL1 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
USP54Q70EL1 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC23.81■■□□□ 1.4
USP54Q70EL1 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP54Q70EL1 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP54Q70EL1 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms