Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 LINC00602-201ENST00000629776 2065 ntBASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 AC092338.2-201ENST00000568827 1415 ntBASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 AP001094.4-201ENST00000579008 2176 ntBASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RUNDC3AQ59EK9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 UBE2SP1-201ENST00000450587 669 ntBASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 AC026471.5-201ENST00000615068 467 ntBASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 AC099398.1-201ENST00000567919 2776 ntBASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.03■□□□□ 0.32
RUNDC3AQ59EK9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 PRORSD1P-201ENST00000295112 541 ntBASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 AC010240.3-201ENST00000607688 395 ntBASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RUNDC3AQ59EK9 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
RUNDC3AQ59EK9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
RUNDC3AQ59EK9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
RUNDC3AQ59EK9 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
RUNDC3AQ59EK9 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms