Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 NKILA-202ENST00000614771 2598 ntBASIC16.17■□□□□ 0.18
CCDC58Q4VC31 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 AC124016.1-201ENST00000609552 612 ntBASIC16.16■□□□□ 0.18
CCDC58Q4VC31 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 AC011298.2-201ENST00000617989 482 ntBASIC16.16■□□□□ 0.18
CCDC58Q4VC31 AC130371.2-201ENST00000619443 611 ntBASIC16.16■□□□□ 0.18
CCDC58Q4VC31 AL031985.4-201ENST00000642138 673 ntBASIC16.16■□□□□ 0.18
CCDC58Q4VC31 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 AC022211.2-201ENST00000585075 2527 ntBASIC16.16■□□□□ 0.18
CCDC58Q4VC31 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CCDC58Q4VC31 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 AL645608.8-201ENST00000606034 2086 ntBASIC16.15■□□□□ 0.18
CCDC58Q4VC31 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 KRT16P1-201ENST00000399124 1418 ntBASIC16.15■□□□□ 0.18
CCDC58Q4VC31 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 AL353807.1-201ENST00000427475 662 ntBASIC16.15■□□□□ 0.18
CCDC58Q4VC31 FAM207BP-201ENST00000447172 505 ntBASIC16.15■□□□□ 0.18
CCDC58Q4VC31 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 KRT8P50-201ENST00000562022 1438 ntBASIC16.15■□□□□ 0.18
CCDC58Q4VC31 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.15■□□□□ 0.18
CCDC58Q4VC31 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
CCDC58Q4VC31 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CCDC58Q4VC31 KRT18P55-202ENST00000578578 1546 ntBASIC16.14■□□□□ 0.18
CCDC58Q4VC31 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC58Q4VC31 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC58Q4VC31 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCDC58Q4VC31 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
CCDC58Q4VC31 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCDC58Q4VC31 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.14■□□□□ 0.17
CCDC58Q4VC31 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCDC58Q4VC31 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms