Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.82■□□□□ 0.92
CTCFP49711 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.82■□□□□ 0.92
CTCFP49711 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.82■□□□□ 0.92
CTCFP49711 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.81■□□□□ 0.92
CTCFP49711 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CTCFP49711 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
CTCFP49711 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC20.81■□□□□ 0.92
CTCFP49711 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC20.81■□□□□ 0.92
CTCFP49711 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC20.81■□□□□ 0.92
CTCFP49711 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
CTCFP49711 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC20.81■□□□□ 0.92
CTCFP49711 AC015911.4-201ENST00000588022 1070 ntBASIC20.81■□□□□ 0.92
CTCFP49711 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC20.81■□□□□ 0.92
CTCFP49711 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CTCFP49711 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.81■□□□□ 0.92
CTCFP49711 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.81■□□□□ 0.92
CTCFP49711 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CTCFP49711 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CTCFP49711 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CTCFP49711 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTCFP49711 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.8■□□□□ 0.92
CTCFP49711 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC20.8■□□□□ 0.92
CTCFP49711 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTCFP49711 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CTCFP49711 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC20.8■□□□□ 0.92
CTCFP49711 AC023141.5-201ENST00000458585 616 ntBASIC20.8■□□□□ 0.92
CTCFP49711 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC20.8■□□□□ 0.92
CTCFP49711 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC20.8■□□□□ 0.92
CTCFP49711 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC20.8■□□□□ 0.92
CTCFP49711 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.8■□□□□ 0.92
CTCFP49711 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.8■□□□□ 0.92
CTCFP49711 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC20.8■□□□□ 0.92
CTCFP49711 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTCFP49711 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTCFP49711 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTCFP49711 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTCFP49711 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CTCFP49711 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
CTCFP49711 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.79■□□□□ 0.92
CTCFP49711 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CTCFP49711 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 MIR661-201ENST00000384842 89 ntBASIC20.79■□□□□ 0.92
CTCFP49711 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 HNRNPA1P40-201ENST00000426371 1278 ntBASIC20.79■□□□□ 0.92
CTCFP49711 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC20.79■□□□□ 0.92
CTCFP49711 ATP5G2P4-201ENST00000442175 420 ntBASIC20.79■□□□□ 0.92
CTCFP49711 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 FAM207CP-201ENST00000443486 507 ntBASIC20.79■□□□□ 0.92
CTCFP49711 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC20.79■□□□□ 0.92
CTCFP49711 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC20.79■□□□□ 0.92
CTCFP49711 CITED2-204ENST00000618718 901 ntTSL 2 BASIC20.79■□□□□ 0.92
CTCFP49711 AC105339.1-204ENST00000636249 355 ntBASIC20.79■□□□□ 0.92
CTCFP49711 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC20.79■□□□□ 0.92
CTCFP49711 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CTCFP49711 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
CTCFP49711 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.79■□□□□ 0.92
CTCFP49711 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CTCFP49711 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CTCFP49711 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTCFP49711 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.78■□□□□ 0.92
CTCFP49711 AL020996.1-203ENST00000536896 2307 ntBASIC20.78■□□□□ 0.92
CTCFP49711 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTCFP49711 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CTCFP49711 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CTCFP49711 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.78■□□□□ 0.92
CTCFP49711 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTCFP49711 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.78■□□□□ 0.92
CTCFP49711 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.78■□□□□ 0.92
CTCFP49711 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.78■□□□□ 0.92
CTCFP49711 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC20.78■□□□□ 0.92
CTCFP49711 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC20.78■□□□□ 0.92
CTCFP49711 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CTCFP49711 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CTCFP49711 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.78■□□□□ 0.92
CTCFP49711 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CTCFP49711 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC20.78■□□□□ 0.92
CTCFP49711 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms