Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 ADH5P3-201ENST00000433842 1137 ntBASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 AC105339.1-204ENST00000636249 355 ntBASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 FEM1AP3-201ENST00000403722 1741 ntBASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 AC236430.1-201ENST00000402231 743 ntBASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 FAM58CP-201ENST00000435741 640 ntBASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 TSPY16P-201ENST00000449843 468 ntBASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 LINC00628-201ENST00000628516 1289 ntBASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 AL024508.2-201ENST00000607749 1894 ntBASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL6A6A6NMZ7 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 AL390955.2-201ENST00000603032 514 ntBASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.16■□□□□ 0.18
COL6A6A6NMZ7 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms