Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CUEDC1Q9NWM3 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CUEDC1Q9NWM3 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CUEDC1Q9NWM3 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CUEDC1Q9NWM3 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
CUEDC1Q9NWM3 AC005332.1-201ENST00000577698 1310 ntBASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 AC004263.2-201ENST00000617183 678 ntBASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 KRT89P-201ENST00000620027 1478 ntBASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 AC132938.6-201ENST00000623828 1655 ntBASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 LINC00602-201ENST00000629776 2065 ntBASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 LINC00167-201ENST00000530583 1419 ntBASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.47■□□□□ 0.39
CUEDC1Q9NWM3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 IGHGP-201ENST00000390555 1178 ntBASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 AC079416.2-201ENST00000625035 1193 ntBASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CUEDC1Q9NWM3 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.46■□□□□ 0.38
CUEDC1Q9NWM3 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
CUEDC1Q9NWM3 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 AC113404.2-201ENST00000507884 177 ntBASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 AC005332.3-201ENST00000589904 676 ntBASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 AC008687.5-201ENST00000593746 558 ntBASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CUEDC1Q9NWM3 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms