Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 AP001005.1-201ENST00000571755 1248 ntBASIC18.67■□□□□ 0.58
HPS4Q9NQG7 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 AC064862.7-201ENST00000604520 867 ntBASIC18.67■□□□□ 0.58
HPS4Q9NQG7 AL773604.1-201ENST00000617417 272 ntBASIC18.67■□□□□ 0.58
HPS4Q9NQG7 AC148477.8-201ENST00000624298 468 ntBASIC18.67■□□□□ 0.58
HPS4Q9NQG7 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HPS4Q9NQG7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 AL499627.1-201ENST00000569373 2188 ntBASIC18.66■□□□□ 0.58
HPS4Q9NQG7 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 AC112777.1-201ENST00000540175 1423 ntBASIC18.66■□□□□ 0.58
HPS4Q9NQG7 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 AC026471.1-201ENST00000564629 3026 ntBASIC18.66■□□□□ 0.58
HPS4Q9NQG7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HPS4Q9NQG7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 TP73-AS1-210ENST00000637775 1455 ntBASIC18.65■□□□□ 0.58
HPS4Q9NQG7 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 KRT18P67-201ENST00000432816 1264 ntBASIC18.65■□□□□ 0.58
HPS4Q9NQG7 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 AC008608.2-201ENST00000606089 416 ntBASIC18.65■□□□□ 0.58
HPS4Q9NQG7 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HPS4Q9NQG7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
HPS4Q9NQG7 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
HPS4Q9NQG7 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
HPS4Q9NQG7 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 MED22-202ENST00000371999 987 ntTSL 3 BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 AL031284.1-201ENST00000419297 478 ntBASIC18.64■□□□□ 0.57
HPS4Q9NQG7 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
HPS4Q9NQG7 IL9RP2-201ENST00000423948 1312 ntBASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms