Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 AC027601.4-201ENST00000611259 610 ntBASIC20.13■□□□□ 0.81
VTA1Q9NP79 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.13■□□□□ 0.81
VTA1Q9NP79 AC079776.2-201ENST00000641154 1609 ntBASIC20.13■□□□□ 0.81
VTA1Q9NP79 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VTA1Q9NP79 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.12■□□□□ 0.81
VTA1Q9NP79 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
VTA1Q9NP79 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
VTA1Q9NP79 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 BX842568.4-201ENST00000421222 227 ntBASIC20.12■□□□□ 0.81
VTA1Q9NP79 LAGE3P1-201ENST00000425356 484 ntBASIC20.12■□□□□ 0.81
VTA1Q9NP79 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.12■□□□□ 0.81
VTA1Q9NP79 AC105339.3-201ENST00000560043 636 ntBASIC20.12■□□□□ 0.81
VTA1Q9NP79 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.12■□□□□ 0.81
VTA1Q9NP79 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.12■□□□□ 0.81
VTA1Q9NP79 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.12■□□□□ 0.81
VTA1Q9NP79 PMPCAP1-201ENST00000508114 1576 ntBASIC20.12■□□□□ 0.81
VTA1Q9NP79 AC010460.3-201ENST00000511359 1579 ntBASIC20.12■□□□□ 0.81
VTA1Q9NP79 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
VTA1Q9NP79 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VTA1Q9NP79 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VTA1Q9NP79 KRT8P47-201ENST00000604727 1398 ntBASIC20.11■□□□□ 0.81
VTA1Q9NP79 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VTA1Q9NP79 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
VTA1Q9NP79 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VTA1Q9NP79 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VTA1Q9NP79 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
VTA1Q9NP79 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 DUTP2-201ENST00000519164 463 ntBASIC20.11■□□□□ 0.81
VTA1Q9NP79 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 AC034105.1-201ENST00000563488 319 ntBASIC20.11■□□□□ 0.81
VTA1Q9NP79 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 Z83851.2-201ENST00000609564 659 ntBASIC20.11■□□□□ 0.81
VTA1Q9NP79 FAM197Y3-203ENST00000618346 717 ntBASIC20.11■□□□□ 0.81
VTA1Q9NP79 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 AC073592.4-201ENST00000623827 446 ntBASIC20.11■□□□□ 0.81
VTA1Q9NP79 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VTA1Q9NP79 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
VTA1Q9NP79 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
VTA1Q9NP79 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
VTA1Q9NP79 PHGDH-209ENST00000641074 1780 ntBASIC20.11■□□□□ 0.81
VTA1Q9NP79 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VTA1Q9NP79 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VTA1Q9NP79 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.1■□□□□ 0.81
VTA1Q9NP79 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.1■□□□□ 0.81
VTA1Q9NP79 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
VTA1Q9NP79 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.1■□□□□ 0.81
VTA1Q9NP79 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms