Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
CCDC28BQ9BUN5 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC28BQ9BUN5 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC28BQ9BUN5 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CCDC28BQ9BUN5 FSCN1P1-201ENST00000568912 1481 ntBASIC17.58■□□□□ 0.41
CCDC28BQ9BUN5 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 AL355312.1-201ENST00000407115 2176 ntBASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 MESTP1-201ENST00000404287 994 ntBASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 DUTP2-201ENST00000519164 463 ntBASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 AC099343.3-201ENST00000605834 2503 ntBASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 AC133963.1-201ENST00000504166 1679 ntBASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.58■□□□□ 0.4
CCDC28BQ9BUN5 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 AC022211.2-201ENST00000585075 2527 ntBASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CCDC28BQ9BUN5 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 KRT8P7-201ENST00000533003 1432 ntBASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 AF186192.3-201ENST00000583427 947 ntBASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.56■□□□□ 0.4
CCDC28BQ9BUN5 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms