Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
KRT40Q6A162 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.93■□□□□ 0.94
KRT40Q6A162 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
KRT40Q6A162 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 STARP1-201ENST00000397973 869 ntBASIC20.93■□□□□ 0.94
KRT40Q6A162 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 SLC25A6P5-201ENST00000435663 894 ntBASIC20.93■□□□□ 0.94
KRT40Q6A162 KRT18P38-201ENST00000449496 1282 ntBASIC20.93■□□□□ 0.94
KRT40Q6A162 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.93■□□□□ 0.94
KRT40Q6A162 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.93■□□□□ 0.94
KRT40Q6A162 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC20.93■□□□□ 0.94
KRT40Q6A162 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.93■□□□□ 0.94
KRT40Q6A162 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
KRT40Q6A162 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
KRT40Q6A162 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.93■□□□□ 0.94
KRT40Q6A162 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.93■□□□□ 0.94
KRT40Q6A162 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.93■□□□□ 0.94
KRT40Q6A162 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
KRT40Q6A162 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.93■□□□□ 0.94
KRT40Q6A162 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
KRT40Q6A162 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.93■□□□□ 0.94
KRT40Q6A162 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.92■□□□□ 0.94
KRT40Q6A162 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
KRT40Q6A162 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
KRT40Q6A162 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC20.92■□□□□ 0.94
KRT40Q6A162 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.92■□□□□ 0.94
KRT40Q6A162 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.92■□□□□ 0.94
KRT40Q6A162 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.92■□□□□ 0.94
KRT40Q6A162 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.92■□□□□ 0.94
KRT40Q6A162 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
KRT40Q6A162 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 AL136038.4-201ENST00000603606 1261 ntBASIC20.92■□□□□ 0.94
KRT40Q6A162 AL691432.3-201ENST00000621860 400 ntBASIC20.92■□□□□ 0.94
KRT40Q6A162 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.92■□□□□ 0.94
KRT40Q6A162 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 HLA-DQB1-201ENST00000374943 1656 ntBASIC20.92■□□□□ 0.94
KRT40Q6A162 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.92■□□□□ 0.94
KRT40Q6A162 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
KRT40Q6A162 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
KRT40Q6A162 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
KRT40Q6A162 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
KRT40Q6A162 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.91■□□□□ 0.94
KRT40Q6A162 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
KRT40Q6A162 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
KRT40Q6A162 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.91■□□□□ 0.94
KRT40Q6A162 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.91■□□□□ 0.94
KRT40Q6A162 AC092597.1-201ENST00000487352 616 ntBASIC20.91■□□□□ 0.94
KRT40Q6A162 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
KRT40Q6A162 LINC00167-201ENST00000530583 1419 ntBASIC20.91■□□□□ 0.94
KRT40Q6A162 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20.91■□□□□ 0.94
KRT40Q6A162 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.91■□□□□ 0.94
KRT40Q6A162 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
KRT40Q6A162 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT40Q6A162 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT40Q6A162 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT40Q6A162 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC20.9■□□□□ 0.94
KRT40Q6A162 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT40Q6A162 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
KRT40Q6A162 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
KRT40Q6A162 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
KRT40Q6A162 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
KRT40Q6A162 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
KRT40Q6A162 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.9■□□□□ 0.94
KRT40Q6A162 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
KRT40Q6A162 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms