Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 RPS2P28-201ENST00000314255 741 ntBASIC17.35■□□□□ 0.37
COL28A1Q2UY09 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 MCCD1P1-208ENST00000445732 328 ntBASIC17.35■□□□□ 0.37
COL28A1Q2UY09 KRT18P3-201ENST00000451602 1288 ntBASIC17.35■□□□□ 0.37
COL28A1Q2UY09 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 MIR5100-201ENST00000579544 119 ntBASIC17.35■□□□□ 0.37
COL28A1Q2UY09 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 AL049812.1-201ENST00000432563 2267 ntBASIC17.35■□□□□ 0.37
COL28A1Q2UY09 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
COL28A1Q2UY09 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 RFPL4AP1-201ENST00000530883 850 ntBASIC17.34■□□□□ 0.37
COL28A1Q2UY09 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
COL28A1Q2UY09 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL28A1Q2UY09 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL28A1Q2UY09 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL28A1Q2UY09 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.33■□□□□ 0.37
COL28A1Q2UY09 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL28A1Q2UY09 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL28A1Q2UY09 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
COL28A1Q2UY09 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL28A1Q2UY09 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
COL28A1Q2UY09 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 RN7SL606P-201ENST00000472779 293 ntBASIC17.33■□□□□ 0.36
COL28A1Q2UY09 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 IGHV3-22-201ENST00000520721 359 ntBASIC17.33■□□□□ 0.36
COL28A1Q2UY09 AC040169.1-201ENST00000565382 521 ntBASIC17.33■□□□□ 0.36
COL28A1Q2UY09 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
COL28A1Q2UY09 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.32■□□□□ 0.36
COL28A1Q2UY09 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms