Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
RNF4P78317 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.7■□□□□ 0.26
RNF4P78317 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.7■□□□□ 0.26
RNF4P78317 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
RNF4P78317 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
RNF4P78317 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.7■□□□□ 0.26
RNF4P78317 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
RNF4P78317 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.69■□□□□ 0.26
RNF4P78317 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.69■□□□□ 0.26
RNF4P78317 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
RNF4P78317 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.69■□□□□ 0.26
RNF4P78317 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
RNF4P78317 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 AC233702.3-201ENST00000578656 1387 ntBASIC16.69■□□□□ 0.26
RNF4P78317 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
RNF4P78317 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
RNF4P78317 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.69■□□□□ 0.26
RNF4P78317 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.69■□□□□ 0.26
RNF4P78317 MTCL1P1-201ENST00000446207 792 ntBASIC16.69■□□□□ 0.26
RNF4P78317 VENTXP7-201ENST00000475503 772 ntBASIC16.69■□□□□ 0.26
RNF4P78317 AP000867.3-201ENST00000524675 377 ntBASIC16.69■□□□□ 0.26
RNF4P78317 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
RNF4P78317 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.69■□□□□ 0.26
RNF4P78317 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
RNF4P78317 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
RNF4P78317 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
RNF4P78317 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.69■□□□□ 0.26
RNF4P78317 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
RNF4P78317 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
RNF4P78317 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
RNF4P78317 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.69■□□□□ 0.26
RNF4P78317 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.68■□□□□ 0.26
RNF4P78317 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 AL845331.1-201ENST00000424978 1190 ntBASIC16.68■□□□□ 0.26
RNF4P78317 AC246785.2-201ENST00000432512 513 ntBASIC16.68■□□□□ 0.26
RNF4P78317 MIR3652-201ENST00000579335 131 ntBASIC16.68■□□□□ 0.26
RNF4P78317 Z69720.1-201ENST00000601483 472 ntBASIC16.68■□□□□ 0.26
RNF4P78317 AL353801.3-201ENST00000609898 542 ntBASIC16.68■□□□□ 0.26
RNF4P78317 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.68■□□□□ 0.26
RNF4P78317 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
RNF4P78317 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
RNF4P78317 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.68■□□□□ 0.26
RNF4P78317 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
RNF4P78317 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms