Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN6P56747 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN6P56747 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN6P56747 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLDN6P56747 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CLDN6P56747 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.29■□□□□ 0.36
CLDN6P56747 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CLDN6P56747 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CLDN6P56747 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.29■□□□□ 0.36
CLDN6P56747 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.29■□□□□ 0.36
CLDN6P56747 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
CLDN6P56747 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.29■□□□□ 0.36
CLDN6P56747 AL591424.1-201ENST00000442569 1213 ntBASIC17.29■□□□□ 0.36
CLDN6P56747 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC17.29■□□□□ 0.36
CLDN6P56747 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CLDN6P56747 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.29■□□□□ 0.36
CLDN6P56747 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.29■□□□□ 0.36
CLDN6P56747 MTDHP4-201ENST00000600287 670 ntBASIC17.29■□□□□ 0.36
CLDN6P56747 AC008735.5-201ENST00000623544 497 ntBASIC17.29■□□□□ 0.36
CLDN6P56747 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CLDN6P56747 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.29■□□□□ 0.36
CLDN6P56747 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.29■□□□□ 0.36
CLDN6P56747 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.29■□□□□ 0.36
CLDN6P56747 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CLDN6P56747 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLDN6P56747 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.28■□□□□ 0.36
CLDN6P56747 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.28■□□□□ 0.36
CLDN6P56747 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.28■□□□□ 0.36
CLDN6P56747 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.28■□□□□ 0.36
CLDN6P56747 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CLDN6P56747 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CLDN6P56747 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.28■□□□□ 0.36
CLDN6P56747 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.28■□□□□ 0.36
CLDN6P56747 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 AC093484.2-201ENST00000580996 2166 ntBASIC17.28■□□□□ 0.36
CLDN6P56747 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
CLDN6P56747 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.28■□□□□ 0.36
CLDN6P56747 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.28■□□□□ 0.36
CLDN6P56747 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.28■□□□□ 0.36
CLDN6P56747 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.28■□□□□ 0.36
CLDN6P56747 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.28■□□□□ 0.36
CLDN6P56747 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.28■□□□□ 0.36
CLDN6P56747 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.28■□□□□ 0.36
CLDN6P56747 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.28■□□□□ 0.36
CLDN6P56747 MIR3687-2-201ENST00000577708 61 ntBASIC17.28■□□□□ 0.36
CLDN6P56747 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 MIR3687-1-201ENST00000614492 61 ntBASIC17.28■□□□□ 0.36
CLDN6P56747 AC009154.2-201ENST00000621177 724 ntBASIC17.28■□□□□ 0.36
CLDN6P56747 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.28■□□□□ 0.36
CLDN6P56747 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.28■□□□□ 0.36
CLDN6P56747 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
CLDN6P56747 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 LINC01126-201ENST00000623515 1646 ntBASIC17.28■□□□□ 0.36
CLDN6P56747 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CLDN6P56747 AL161938.1-201ENST00000569833 2180 ntBASIC17.28■□□□□ 0.36
CLDN6P56747 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLDN6P56747 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN6P56747 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN6P56747 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CLDN6P56747 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms