Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.91■□□□□ 0.46
CXCL12P48061 CNN2P11-201ENST00000429351 262 ntBASIC17.91■□□□□ 0.46
CXCL12P48061 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.91■□□□□ 0.46
CXCL12P48061 ALG1L5P-201ENST00000482043 771 ntBASIC17.91■□□□□ 0.46
CXCL12P48061 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
CXCL12P48061 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CXCL12P48061 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.91■□□□□ 0.46
CXCL12P48061 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.91■□□□□ 0.46
CXCL12P48061 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.91■□□□□ 0.46
CXCL12P48061 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.91■□□□□ 0.46
CXCL12P48061 AC092364.2-202ENST00000597012 1073 ntBASIC17.91■□□□□ 0.46
CXCL12P48061 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CXCL12P48061 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CXCL12P48061 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CXCL12P48061 AC007952.6-201ENST00000573168 2673 ntBASIC17.91■□□□□ 0.46
CXCL12P48061 AC003957.1-201ENST00000625108 2673 ntBASIC17.91■□□□□ 0.46
CXCL12P48061 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.91■□□□□ 0.46
CXCL12P48061 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.91■□□□□ 0.46
CXCL12P48061 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CXCL12P48061 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CXCL12P48061 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CXCL12P48061 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
CXCL12P48061 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CXCL12P48061 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.9■□□□□ 0.46
CXCL12P48061 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 SPDYE21P-201ENST00000413323 827 ntBASIC17.9■□□□□ 0.46
CXCL12P48061 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.9■□□□□ 0.46
CXCL12P48061 HTR5BP-201ENST00000430851 1154 ntBASIC17.9■□□□□ 0.46
CXCL12P48061 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.9■□□□□ 0.46
CXCL12P48061 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.9■□□□□ 0.46
CXCL12P48061 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.9■□□□□ 0.46
CXCL12P48061 AP002472.1-201ENST00000577490 586 ntBASIC17.9■□□□□ 0.46
CXCL12P48061 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.9■□□□□ 0.46
CXCL12P48061 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.9■□□□□ 0.46
CXCL12P48061 AC092865.6-201ENST00000642101 219 ntBASIC17.9■□□□□ 0.46
CXCL12P48061 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
CXCL12P48061 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
CXCL12P48061 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CXCL12P48061 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.9■□□□□ 0.46
CXCL12P48061 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.9■□□□□ 0.46
CXCL12P48061 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.9■□□□□ 0.46
CXCL12P48061 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CXCL12P48061 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
CXCL12P48061 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CXCL12P48061 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CXCL12P48061 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.89■□□□□ 0.46
CXCL12P48061 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
CXCL12P48061 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
CXCL12P48061 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CXCL12P48061 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.89■□□□□ 0.45
CXCL12P48061 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CXCL12P48061 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CXCL12P48061 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CXCL12P48061 AC096633.1-201ENST00000422446 749 ntBASIC17.89■□□□□ 0.45
CXCL12P48061 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.89■□□□□ 0.45
CXCL12P48061 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.89■□□□□ 0.45
CXCL12P48061 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.89■□□□□ 0.45
CXCL12P48061 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC17.89■□□□□ 0.45
CXCL12P48061 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
CXCL12P48061 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CXCL12P48061 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.89■□□□□ 0.45
CXCL12P48061 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
CXCL12P48061 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CXCL12P48061 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CXCL12P48061 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.89■□□□□ 0.45
CXCL12P48061 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.89■□□□□ 0.45
CXCL12P48061 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.89■□□□□ 0.45
CXCL12P48061 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL12P48061 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.88■□□□□ 0.45
CXCL12P48061 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.88■□□□□ 0.45
CXCL12P48061 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CXCL12P48061 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL12P48061 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL12P48061 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.88■□□□□ 0.45
CXCL12P48061 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CXCL12P48061 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.88■□□□□ 0.45
CXCL12P48061 PNMT-202ENST00000394246 821 ntTSL 2 BASIC17.88■□□□□ 0.45
CXCL12P48061 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.88■□□□□ 0.45
CXCL12P48061 AC103564.2-201ENST00000432853 1299 ntBASIC17.88■□□□□ 0.45
CXCL12P48061 MKNK2P1-201ENST00000437526 628 ntBASIC17.88■□□□□ 0.45
CXCL12P48061 VN2R19P-201ENST00000442399 1052 ntBASIC17.88■□□□□ 0.45
CXCL12P48061 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
CXCL12P48061 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
CXCL12P48061 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
CXCL12P48061 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.88■□□□□ 0.45
CXCL12P48061 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.88■□□□□ 0.45
CXCL12P48061 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
CXCL12P48061 MIR4751-201ENST00000578027 74 ntBASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms