Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
CDX1P47902 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CDX1P47902 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CDX1P47902 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 LGALS8-AS1-201ENST00000487567 1457 ntBASIC14.76□□□□□ -0.05
CDX1P47902 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
CDX1P47902 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC14.76□□□□□ -0.05
CDX1P47902 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CDX1P47902 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC14.76□□□□□ -0.05
CDX1P47902 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CDX1P47902 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CDX1P47902 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CDX1P47902 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC14.76□□□□□ -0.05
CDX1P47902 INGX-201ENST00000359239 846 ntBASIC14.76□□□□□ -0.05
CDX1P47902 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC14.76□□□□□ -0.05
CDX1P47902 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
CDX1P47902 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
CDX1P47902 MIR1224-201ENST00000408193 85 ntBASIC14.76□□□□□ -0.05
CDX1P47902 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC14.76□□□□□ -0.05
CDX1P47902 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC14.76□□□□□ -0.05
CDX1P47902 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC14.76□□□□□ -0.05
CDX1P47902 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CDX1P47902 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC14.76□□□□□ -0.05
CDX1P47902 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CDX1P47902 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CDX1P47902 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CDX1P47902 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 AL645608.8-201ENST00000606034 2086 ntBASIC14.75□□□□□ -0.05
CDX1P47902 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC14.75□□□□□ -0.05
CDX1P47902 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
CDX1P47902 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 TSPY23P-201ENST00000440136 739 ntBASIC14.75□□□□□ -0.05
CDX1P47902 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 AC010203.1-204ENST00000548782 407 ntBASIC14.75□□□□□ -0.05
CDX1P47902 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC14.75□□□□□ -0.05
CDX1P47902 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC14.75□□□□□ -0.05
CDX1P47902 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
CDX1P47902 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CDX1P47902 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 NKILA-202ENST00000614771 2598 ntBASIC14.75□□□□□ -0.05
CDX1P47902 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC14.75□□□□□ -0.05
CDX1P47902 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CDX1P47902 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CDX1P47902 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDX1P47902 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CDX1P47902 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CDX1P47902 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC14.74□□□□□ -0.05
CDX1P47902 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDX1P47902 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC14.74□□□□□ -0.05
CDX1P47902 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC14.74□□□□□ -0.05
CDX1P47902 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDX1P47902 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDX1P47902 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
CDX1P47902 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDX1P47902 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDX1P47902 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
CDX1P47902 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.74□□□□□ -0.05
CDX1P47902 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CDX1P47902 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CDX1P47902 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms