Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HNF4AP41235 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HNF4AP41235 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 AL359075.1-203ENST00000462729 1002 ntBASIC17.54■□□□□ 0.4
HNF4AP41235 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
HNF4AP41235 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.54■□□□□ 0.4
HNF4AP41235 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.54■□□□□ 0.4
HNF4AP41235 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
HNF4AP41235 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HNF4AP41235 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.54■□□□□ 0.4
HNF4AP41235 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.54■□□□□ 0.4
HNF4AP41235 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.54■□□□□ 0.4
HNF4AP41235 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.54■□□□□ 0.4
HNF4AP41235 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
HNF4AP41235 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
HNF4AP41235 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.53■□□□□ 0.4
HNF4AP41235 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
HNF4AP41235 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
HNF4AP41235 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
HNF4AP41235 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.53■□□□□ 0.4
HNF4AP41235 FAM210CP-201ENST00000445714 574 ntBASIC17.53■□□□□ 0.4
HNF4AP41235 AC092647.4-201ENST00000457211 535 ntBASIC17.53■□□□□ 0.4
HNF4AP41235 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
HNF4AP41235 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.53■□□□□ 0.4
HNF4AP41235 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.53■□□□□ 0.4
HNF4AP41235 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.53■□□□□ 0.4
HNF4AP41235 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.53■□□□□ 0.4
HNF4AP41235 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.53■□□□□ 0.4
HNF4AP41235 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.53■□□□□ 0.4
HNF4AP41235 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.53■□□□□ 0.4
HNF4AP41235 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HNF4AP41235 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.53■□□□□ 0.4
HNF4AP41235 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.53■□□□□ 0.4
HNF4AP41235 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HNF4AP41235 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
HNF4AP41235 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HNF4AP41235 AC068880.1-201ENST00000507289 2297 ntBASIC17.52■□□□□ 0.4
HNF4AP41235 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HNF4AP41235 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
HNF4AP41235 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HNF4AP41235 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HNF4AP41235 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HNF4AP41235 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
HNF4AP41235 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HNF4AP41235 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HNF4AP41235 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HNF4AP41235 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
HNF4AP41235 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HNF4AP41235 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
HNF4AP41235 SPDYE15P-201ENST00000424157 909 ntBASIC17.52■□□□□ 0.4
HNF4AP41235 RASA4DP-201ENST00000460726 1199 ntBASIC17.52■□□□□ 0.4
HNF4AP41235 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.52■□□□□ 0.4
HNF4AP41235 DUX4L26-201ENST00000489078 1255 ntBASIC17.52■□□□□ 0.4
HNF4AP41235 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.52■□□□□ 0.4
HNF4AP41235 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
HNF4AP41235 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.52■□□□□ 0.4
HNF4AP41235 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
HNF4AP41235 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.52■□□□□ 0.4
HNF4AP41235 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
HNF4AP41235 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HNF4AP41235 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.52■□□□□ 0.4
HNF4AP41235 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HNF4AP41235 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.52■□□□□ 0.4
HNF4AP41235 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.52■□□□□ 0.4
HNF4AP41235 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HNF4AP41235 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
HNF4AP41235 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HNF4AP41235 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HNF4AP41235 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HNF4AP41235 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HNF4AP41235 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.52■□□□□ 0.39
HNF4AP41235 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HNF4AP41235 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms