Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
BRCA1P38398 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.08
BRCA1P38398 AC093520.2-201ENST00000561830 333 ntBASIC21.83■■□□□ 1.08
BRCA1P38398 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
BRCA1P38398 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.08
BRCA1P38398 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.83■■□□□ 1.08
BRCA1P38398 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
BRCA1P38398 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
BRCA1P38398 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
BRCA1P38398 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
BRCA1P38398 AC236430.1-201ENST00000402231 743 ntBASIC21.82■■□□□ 1.08
BRCA1P38398 S100A2-206ENST00000497140 697 ntTSL 2 BASIC21.82■■□□□ 1.08
BRCA1P38398 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC21.82■■□□□ 1.08
BRCA1P38398 AC132938.5-201ENST00000624980 1813 ntBASIC21.82■■□□□ 1.08
BRCA1P38398 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
BRCA1P38398 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.82■■□□□ 1.08
BRCA1P38398 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
BRCA1P38398 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
BRCA1P38398 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
BRCA1P38398 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
BRCA1P38398 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.82■■□□□ 1.08
BRCA1P38398 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
BRCA1P38398 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
BRCA1P38398 AC103564.2-201ENST00000432853 1299 ntBASIC21.81■■□□□ 1.08
BRCA1P38398 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC21.81■■□□□ 1.08
BRCA1P38398 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.81■■□□□ 1.08
BRCA1P38398 LINC00628-201ENST00000628516 1289 ntBASIC21.81■■□□□ 1.08
BRCA1P38398 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
BRCA1P38398 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
BRCA1P38398 AC067863.1-201ENST00000494933 530 ntBASIC21.81■■□□□ 1.08
BRCA1P38398 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
BRCA1P38398 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.81■■□□□ 1.08
BRCA1P38398 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
BRCA1P38398 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC21.8■■□□□ 1.08
BRCA1P38398 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
BRCA1P38398 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 AC002472.2-201ENST00000442739 958 ntBASIC21.8■■□□□ 1.08
BRCA1P38398 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.8■■□□□ 1.08
BRCA1P38398 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 AC096734.2-201ENST00000562054 433 ntBASIC21.8■■□□□ 1.08
BRCA1P38398 AC004835.2-201ENST00000603762 682 ntBASIC21.8■■□□□ 1.08
BRCA1P38398 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.8■■□□□ 1.08
BRCA1P38398 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
BRCA1P38398 AL157384.1-201ENST00000445995 2473 ntBASIC21.8■■□□□ 1.08
BRCA1P38398 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.8■■□□□ 1.08
BRCA1P38398 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BRCA1P38398 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC21.79■■□□□ 1.08
BRCA1P38398 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
BRCA1P38398 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.79■■□□□ 1.08
BRCA1P38398 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC21.79■■□□□ 1.08
BRCA1P38398 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.79■■□□□ 1.08
BRCA1P38398 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC21.79■■□□□ 1.08
BRCA1P38398 FUT8-AS1-201ENST00000621019 1521 ntBASIC21.79■■□□□ 1.08
BRCA1P38398 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.79■■□□□ 1.08
BRCA1P38398 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BRCA1P38398 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
BRCA1P38398 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.79■■□□□ 1.08
BRCA1P38398 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BRCA1P38398 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
BRCA1P38398 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.79■■□□□ 1.08
BRCA1P38398 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
BRCA1P38398 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.79■■□□□ 1.08
BRCA1P38398 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.79■■□□□ 1.08
BRCA1P38398 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC21.79■■□□□ 1.08
BRCA1P38398 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.79■■□□□ 1.08
BRCA1P38398 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.79■■□□□ 1.08
BRCA1P38398 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.79■■□□□ 1.08
BRCA1P38398 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
BRCA1P38398 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
BRCA1P38398 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BRCA1P38398 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.78■■□□□ 1.08
BRCA1P38398 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.78■■□□□ 1.08
BRCA1P38398 AP002414.1-201ENST00000391405 1147 ntBASIC21.78■■□□□ 1.08
BRCA1P38398 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
BRCA1P38398 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
BRCA1P38398 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.78■■□□□ 1.08
BRCA1P38398 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.78■■□□□ 1.08
BRCA1P38398 AC051619.7-201ENST00000568314 623 ntBASIC21.78■■□□□ 1.08
BRCA1P38398 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.78■■□□□ 1.08
BRCA1P38398 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC21.78■■□□□ 1.08
BRCA1P38398 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC21.78■■□□□ 1.08
BRCA1P38398 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21.78■■□□□ 1.08
BRCA1P38398 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BRCA1P38398 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BRCA1P38398 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC21.78■■□□□ 1.08
BRCA1P38398 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BRCA1P38398 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.78■■□□□ 1.08
BRCA1P38398 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.78■■□□□ 1.08
BRCA1P38398 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BRCA1P38398 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
BRCA1P38398 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
BRCA1P38398 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms