Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
COL9A1P20849 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.52■□□□□ 0.55
COL9A1P20849 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.51■□□□□ 0.55
COL9A1P20849 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
COL9A1P20849 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
COL9A1P20849 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.51■□□□□ 0.55
COL9A1P20849 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.51■□□□□ 0.55
COL9A1P20849 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.51■□□□□ 0.55
COL9A1P20849 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
COL9A1P20849 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 AL161938.1-201ENST00000569833 2180 ntBASIC18.51■□□□□ 0.55
COL9A1P20849 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.51■□□□□ 0.55
COL9A1P20849 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL9A1P20849 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL9A1P20849 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.51■□□□□ 0.55
COL9A1P20849 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.51■□□□□ 0.55
COL9A1P20849 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 MIR661-201ENST00000384842 89 ntBASIC18.51■□□□□ 0.55
COL9A1P20849 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL9A1P20849 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.51■□□□□ 0.55
COL9A1P20849 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC18.51■□□□□ 0.55
COL9A1P20849 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.51■□□□□ 0.55
COL9A1P20849 KRT18P41-201ENST00000518924 1277 ntBASIC18.51■□□□□ 0.55
COL9A1P20849 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
COL9A1P20849 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.51■□□□□ 0.55
COL9A1P20849 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.51■□□□□ 0.55
COL9A1P20849 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.51■□□□□ 0.55
COL9A1P20849 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
COL9A1P20849 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.51■□□□□ 0.55
COL9A1P20849 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL9A1P20849 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL9A1P20849 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.5■□□□□ 0.55
COL9A1P20849 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.5■□□□□ 0.55
COL9A1P20849 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL9A1P20849 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL9A1P20849 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL9A1P20849 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
COL9A1P20849 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL9A1P20849 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL9A1P20849 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL9A1P20849 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.5■□□□□ 0.55
COL9A1P20849 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL9A1P20849 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.5■□□□□ 0.55
COL9A1P20849 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL9A1P20849 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
COL9A1P20849 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL9A1P20849 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC18.49■□□□□ 0.55
COL9A1P20849 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL9A1P20849 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
COL9A1P20849 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL9A1P20849 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC18.49■□□□□ 0.55
COL9A1P20849 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.49■□□□□ 0.55
COL9A1P20849 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL9A1P20849 NAA60-208ENST00000570819 833 ntTSL 2 BASIC18.49■□□□□ 0.55
COL9A1P20849 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.49■□□□□ 0.55
COL9A1P20849 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.49■□□□□ 0.55
COL9A1P20849 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.49■□□□□ 0.55
COL9A1P20849 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.49■□□□□ 0.55
COL9A1P20849 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL9A1P20849 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL9A1P20849 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.49■□□□□ 0.55
COL9A1P20849 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL9A1P20849 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.49■□□□□ 0.55
COL9A1P20849 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL9A1P20849 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.49■□□□□ 0.55
COL9A1P20849 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL9A1P20849 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.49■□□□□ 0.55
COL9A1P20849 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL9A1P20849 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL9A1P20849 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
COL9A1P20849 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL9A1P20849 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL9A1P20849 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL9A1P20849 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL9A1P20849 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL9A1P20849 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.48■□□□□ 0.55
COL9A1P20849 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.48■□□□□ 0.55
COL9A1P20849 AC109322.1-201ENST00000524499 1264 ntBASIC18.48■□□□□ 0.55
COL9A1P20849 AC027307.3-201ENST00000594262 1100 ntBASIC18.48■□□□□ 0.55
COL9A1P20849 AC004835.2-201ENST00000603762 682 ntBASIC18.48■□□□□ 0.55
COL9A1P20849 AP001002.2-201ENST00000625137 386 ntBASIC18.48■□□□□ 0.55
COL9A1P20849 RETN-203ENST00000629642 400 ntTSL 5 BASIC18.48■□□□□ 0.55
COL9A1P20849 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC18.48■□□□□ 0.55
COL9A1P20849 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL9A1P20849 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL9A1P20849 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms