Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A3P12111 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.69■□□□□ 0.58
COL6A3P12111 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL6A3P12111 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL6A3P12111 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A3P12111 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.69■□□□□ 0.58
COL6A3P12111 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A3P12111 LINC00602-201ENST00000629776 2065 ntBASIC18.69■□□□□ 0.58
COL6A3P12111 AL163051.1-201ENST00000569214 1512 ntBASIC18.69■□□□□ 0.58
COL6A3P12111 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A3P12111 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A3P12111 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A3P12111 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL6A3P12111 NME6-203ENST00000415644 849 ntTSL 2 BASIC18.69■□□□□ 0.58
COL6A3P12111 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.69■□□□□ 0.58
COL6A3P12111 AC099522.2-201ENST00000607001 744 ntBASIC18.69■□□□□ 0.58
COL6A3P12111 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A3P12111 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A3P12111 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL6A3P12111 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A3P12111 FAM86MP-201ENST00000340703 885 ntBASIC18.68■□□□□ 0.58
COL6A3P12111 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A3P12111 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC18.68■□□□□ 0.58
COL6A3P12111 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.68■□□□□ 0.58
COL6A3P12111 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A3P12111 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A3P12111 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A3P12111 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A3P12111 AC092933.1-201ENST00000393644 945 ntBASIC18.68■□□□□ 0.58
COL6A3P12111 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
COL6A3P12111 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
COL6A3P12111 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A3P12111 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL6A3P12111 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.68■□□□□ 0.58
COL6A3P12111 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL6A3P12111 KRT8P32-201ENST00000512863 1461 ntBASIC18.68■□□□□ 0.58
COL6A3P12111 TEX21P-204ENST00000641479 1693 ntBASIC18.67■□□□□ 0.58
COL6A3P12111 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
COL6A3P12111 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A3P12111 AC023141.13-201ENST00000604991 943 ntBASIC18.67■□□□□ 0.58
COL6A3P12111 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A3P12111 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL6A3P12111 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A3P12111 KRT8P47-201ENST00000604727 1398 ntBASIC18.67■□□□□ 0.58
COL6A3P12111 ELK2AP-201ENST00000392510 1007 ntBASIC18.67■□□□□ 0.58
COL6A3P12111 AC092580.3-201ENST00000430932 139 ntBASIC18.67■□□□□ 0.58
COL6A3P12111 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A3P12111 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A3P12111 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A3P12111 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.67■□□□□ 0.58
COL6A3P12111 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.67■□□□□ 0.58
COL6A3P12111 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.67■□□□□ 0.58
COL6A3P12111 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A3P12111 AC008667.4-201ENST00000607370 168 ntBASIC18.67■□□□□ 0.58
COL6A3P12111 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A3P12111 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A3P12111 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
COL6A3P12111 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A3P12111 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.67■□□□□ 0.58
COL6A3P12111 AC005082.1-201ENST00000413042 2259 ntBASIC18.67■□□□□ 0.58
COL6A3P12111 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A3P12111 PCDHAC2-203ENST00000615316 3011 ntBASIC18.67■□□□□ 0.58
COL6A3P12111 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL6A3P12111 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
COL6A3P12111 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.67■□□□□ 0.58
COL6A3P12111 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
COL6A3P12111 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC18.67■□□□□ 0.58
COL6A3P12111 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.66■□□□□ 0.58
COL6A3P12111 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL6A3P12111 REXO1L6P-201ENST00000603433 1515 ntBASIC18.66■□□□□ 0.58
COL6A3P12111 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
COL6A3P12111 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A3P12111 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A3P12111 MTCL1P1-201ENST00000446207 792 ntBASIC18.66■□□□□ 0.58
COL6A3P12111 KRT17P8-201ENST00000540749 863 ntBASIC18.66■□□□□ 0.58
COL6A3P12111 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 MIR6727-201ENST00000620702 65 ntBASIC18.66■□□□□ 0.58
COL6A3P12111 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 Z98044.1-201ENST00000632503 1764 ntBASIC18.66■□□□□ 0.58
COL6A3P12111 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A3P12111 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL6A3P12111 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.66■□□□□ 0.58
COL6A3P12111 KRT18P32-201ENST00000424695 1287 ntBASIC18.66■□□□□ 0.58
COL6A3P12111 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL6A3P12111 AC129492.6-201ENST00000611383 1305 ntBASIC18.66■□□□□ 0.58
COL6A3P12111 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A3P12111 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.65■□□□□ 0.58
COL6A3P12111 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A3P12111 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A3P12111 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms