Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.32■■□□□ 1
HMGB1P09429 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.32■■□□□ 1
HMGB1P09429 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.32■■□□□ 1
HMGB1P09429 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.32■■□□□ 1
HMGB1P09429 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.32■■□□□ 1
HMGB1P09429 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.32■■□□□ 1
HMGB1P09429 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC21.32■■□□□ 1
HMGB1P09429 ZNF444P1-201ENST00000559497 298 ntBASIC21.32■■□□□ 1
HMGB1P09429 RN7SL850P-201ENST00000579959 291 ntBASIC21.32■■□□□ 1
HMGB1P09429 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.32■■□□□ 1
HMGB1P09429 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.32■■□□□ 1
HMGB1P09429 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.32■■□□□ 1
HMGB1P09429 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.32■■□□□ 1
HMGB1P09429 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
HMGB1P09429 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
HMGB1P09429 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HMGB1P09429 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
HMGB1P09429 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.31■■□□□ 1
HMGB1P09429 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC21.31■■□□□ 1
HMGB1P09429 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.31■■□□□ 1
HMGB1P09429 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.31■■□□□ 1
HMGB1P09429 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC21.31■■□□□ 1
HMGB1P09429 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.31■■□□□ 1
HMGB1P09429 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.31■■□□□ 1
HMGB1P09429 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.31■■□□□ 1
HMGB1P09429 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.31■■□□□ 1
HMGB1P09429 AP003733.1-201ENST00000491725 852 ntBASIC21.31■■□□□ 1
HMGB1P09429 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC21.31■■□□□ 1
HMGB1P09429 AC022616.7-201ENST00000525383 220 ntBASIC21.31■■□□□ 1
HMGB1P09429 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.31■■□□□ 1
HMGB1P09429 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC21.31■■□□□ 1
HMGB1P09429 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
HMGB1P09429 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
HMGB1P09429 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
HMGB1P09429 AC006116.8-202ENST00000587620 1550 ntBASIC21.31■■□□□ 1
HMGB1P09429 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HMGB1P09429 AC067852.2-201ENST00000590513 2313 ntBASIC21.3■■□□□ 1
HMGB1P09429 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB1P09429 LINC01311-201ENST00000565162 1445 ntBASIC21.3■■□□□ 1
HMGB1P09429 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB1P09429 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.3■■□□□ 1
HMGB1P09429 IGHGP-201ENST00000390555 1178 ntBASIC21.3■■□□□ 1
HMGB1P09429 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.3■■□□□ 1
HMGB1P09429 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.3■■□□□ 1
HMGB1P09429 TMPOP1-202ENST00000424642 1267 ntBASIC21.3■■□□□ 1
HMGB1P09429 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.3■■□□□ 1
HMGB1P09429 DUX4L26-201ENST00000489078 1255 ntBASIC21.3■■□□□ 1
HMGB1P09429 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.3■■□□□ 1
HMGB1P09429 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.3■■□□□ 1
HMGB1P09429 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21.3■■□□□ 1
HMGB1P09429 AC009154.2-201ENST00000621177 724 ntBASIC21.3■■□□□ 1
HMGB1P09429 DFFB-212ENST00000625756 649 ntTSL 5 BASIC21.3■■□□□ 1
HMGB1P09429 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB1P09429 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB1P09429 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.3■■□□□ 1
HMGB1P09429 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC21.3■■□□□ 1
HMGB1P09429 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB1P09429 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
HMGB1P09429 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB1P09429 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.3■■□□□ 1
HMGB1P09429 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB1P09429 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
HMGB1P09429 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HMGB1P09429 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.29■■□□□ 1
HMGB1P09429 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.29■■□□□ 1
HMGB1P09429 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.29■■□□□ 1
HMGB1P09429 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms