Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
COL4A2P08572 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.08■□□□□ 0.48
COL4A2P08572 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.08■□□□□ 0.48
COL4A2P08572 AC019129.2-201ENST00000609837 1235 ntBASIC18.08■□□□□ 0.48
COL4A2P08572 AL589182.2-201ENST00000619332 1049 ntBASIC18.08■□□□□ 0.48
COL4A2P08572 AC004706.3-202ENST00000621574 984 ntBASIC18.08■□□□□ 0.48
COL4A2P08572 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.08■□□□□ 0.48
COL4A2P08572 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A2P08572 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A2P08572 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
COL4A2P08572 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
COL4A2P08572 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.08■□□□□ 0.48
COL4A2P08572 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.07■□□□□ 0.48
COL4A2P08572 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
COL4A2P08572 CRYGEP-201ENST00000412192 528 ntBASIC18.07■□□□□ 0.48
COL4A2P08572 IGLL3P-201ENST00000412472 434 ntBASIC18.07■□□□□ 0.48
COL4A2P08572 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A2P08572 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.07■□□□□ 0.48
COL4A2P08572 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A2P08572 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A2P08572 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.07■□□□□ 0.48
COL4A2P08572 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL4A2P08572 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.07■□□□□ 0.48
COL4A2P08572 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A2P08572 AC008667.4-201ENST00000607370 168 ntBASIC18.07■□□□□ 0.48
COL4A2P08572 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A2P08572 AC010654.1-201ENST00000615722 808 ntBASIC18.07■□□□□ 0.48
COL4A2P08572 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A2P08572 AC005593.1-201ENST00000624894 515 ntBASIC18.07■□□□□ 0.48
COL4A2P08572 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.07■□□□□ 0.48
COL4A2P08572 AC010507.1-201ENST00000633895 436 ntBASIC18.07■□□□□ 0.48
COL4A2P08572 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A2P08572 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A2P08572 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
COL4A2P08572 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 AC132938.5-201ENST00000624980 1813 ntBASIC18.07■□□□□ 0.48
COL4A2P08572 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A2P08572 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.07■□□□□ 0.48
COL4A2P08572 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A2P08572 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A2P08572 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A2P08572 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.06■□□□□ 0.48
COL4A2P08572 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.06■□□□□ 0.48
COL4A2P08572 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A2P08572 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A2P08572 AL805961.1-202ENST00000641562 540 ntBASIC18.06■□□□□ 0.48
COL4A2P08572 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL4A2P08572 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.06■□□□□ 0.48
COL4A2P08572 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
COL4A2P08572 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.06■□□□□ 0.48
COL4A2P08572 CYMP-203ENST00000474680 1263 ntBASIC18.06■□□□□ 0.48
COL4A2P08572 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A2P08572 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A2P08572 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A2P08572 AL078644.1-201ENST00000609881 752 ntBASIC18.06■□□□□ 0.48
COL4A2P08572 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
COL4A2P08572 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.06■□□□□ 0.48
COL4A2P08572 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A2P08572 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A2P08572 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A2P08572 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A2P08572 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.05■□□□□ 0.48
COL4A2P08572 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A2P08572 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.05■□□□□ 0.48
COL4A2P08572 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
COL4A2P08572 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A2P08572 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A2P08572 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.05■□□□□ 0.48
COL4A2P08572 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.05■□□□□ 0.48
COL4A2P08572 MKNK2P1-201ENST00000437526 628 ntBASIC18.05■□□□□ 0.48
COL4A2P08572 MIR4751-201ENST00000578027 74 ntBASIC18.05■□□□□ 0.48
COL4A2P08572 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A2P08572 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.05■□□□□ 0.48
COL4A2P08572 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms