Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.13■□□□□ 0.01
ABCA1O95477 AC106730.1-201ENST00000566722 1090 ntBASIC15.13■□□□□ 0.01
ABCA1O95477 AC010327.4-202ENST00000591484 748 ntBASIC15.13■□□□□ 0.01
ABCA1O95477 MIR7706-201ENST00000613747 67 ntBASIC15.13■□□□□ 0.01
ABCA1O95477 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
ABCA1O95477 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC15.13■□□□□ 0.01
ABCA1O95477 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.13■□□□□ 0.01
ABCA1O95477 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.13■□□□□ 0.01
ABCA1O95477 AC005104.2-201ENST00000427818 678 ntBASIC15.13■□□□□ 0.01
ABCA1O95477 KRT18P41-201ENST00000518924 1277 ntBASIC15.13■□□□□ 0.01
ABCA1O95477 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC15.13■□□□□ 0.01
ABCA1O95477 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
ABCA1O95477 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA1O95477 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
ABCA1O95477 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA1O95477 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
ABCA1O95477 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA1O95477 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
ABCA1O95477 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA1O95477 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA1O95477 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
ABCA1O95477 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
ABCA1O95477 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA1O95477 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
ABCA1O95477 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
ABCA1O95477 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA1O95477 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
ABCA1O95477 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA1O95477 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA1O95477 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC15.12■□□□□ 0.01
ABCA1O95477 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC15.12■□□□□ 0.01
ABCA1O95477 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.12■□□□□ 0.01
ABCA1O95477 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA1O95477 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA1O95477 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC15.11■□□□□ 0.01
ABCA1O95477 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
ABCA1O95477 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC15.11■□□□□ 0.01
ABCA1O95477 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
ABCA1O95477 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
ABCA1O95477 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
ABCA1O95477 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC15.11■□□□□ 0.01
ABCA1O95477 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 AL355877.3-201ENST00000622820 899 ntBASIC15.11■□□□□ 0.01
ABCA1O95477 AC055717.3-201ENST00000622967 595 ntBASIC15.11■□□□□ 0.01
ABCA1O95477 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC15.11■□□□□ 0.01
ABCA1O95477 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC15.11■□□□□ 0.01
ABCA1O95477 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.11■□□□□ 0.01
ABCA1O95477 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
ABCA1O95477 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.11■□□□□ 0.01
ABCA1O95477 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC15.11■□□□□ 0.01
ABCA1O95477 IRX1P1-201ENST00000438849 1838 ntBASIC15.11■□□□□ 0.01
ABCA1O95477 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
ABCA1O95477 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA1O95477 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
ABCA1O95477 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms