Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC3O15379 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
HDAC3O15379 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 NF2-208ENST00000403435 2568 ntTSL 5 BASIC17.59■□□□□ 0.41
HDAC3O15379 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.59■□□□□ 0.41
HDAC3O15379 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HDAC3O15379 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HDAC3O15379 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.59■□□□□ 0.41
HDAC3O15379 AC097488.1-201ENST00000507834 756 ntBASIC17.59■□□□□ 0.41
HDAC3O15379 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
HDAC3O15379 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.59■□□□□ 0.41
HDAC3O15379 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.59■□□□□ 0.41
HDAC3O15379 CD177P1-201ENST00000606252 935 ntBASIC17.59■□□□□ 0.41
HDAC3O15379 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.59■□□□□ 0.41
HDAC3O15379 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.59■□□□□ 0.41
HDAC3O15379 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC3O15379 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
HDAC3O15379 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.59■□□□□ 0.41
HDAC3O15379 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.58■□□□□ 0.41
HDAC3O15379 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
HDAC3O15379 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.58■□□□□ 0.41
HDAC3O15379 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
HDAC3O15379 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HDAC3O15379 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
HDAC3O15379 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.58■□□□□ 0.41
HDAC3O15379 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
HDAC3O15379 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
HDAC3O15379 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.58■□□□□ 0.4
HDAC3O15379 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.58■□□□□ 0.4
HDAC3O15379 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.58■□□□□ 0.4
HDAC3O15379 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.58■□□□□ 0.4
HDAC3O15379 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.58■□□□□ 0.4
HDAC3O15379 AC092666.2-201ENST00000613287 246 ntBASIC17.58■□□□□ 0.4
HDAC3O15379 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HDAC3O15379 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
HDAC3O15379 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
HDAC3O15379 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.57■□□□□ 0.4
HDAC3O15379 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.57■□□□□ 0.4
HDAC3O15379 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC3O15379 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
HDAC3O15379 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
HDAC3O15379 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.57■□□□□ 0.4
HDAC3O15379 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
HDAC3O15379 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
HDAC3O15379 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC3O15379 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC3O15379 MIR3180-4-201ENST00000582223 153 ntBASIC17.57■□□□□ 0.4
HDAC3O15379 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.57■□□□□ 0.4
HDAC3O15379 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
HDAC3O15379 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.57■□□□□ 0.4
HDAC3O15379 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms