Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC18.46■□□□□ 0.54
CBX4O00257 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.45■□□□□ 0.54
CBX4O00257 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 LINC00265-3P-201ENST00000447588 903 ntBASIC18.45■□□□□ 0.54
CBX4O00257 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.45■□□□□ 0.54
CBX4O00257 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.45■□□□□ 0.54
CBX4O00257 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.45■□□□□ 0.54
CBX4O00257 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.45■□□□□ 0.54
CBX4O00257 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.45■□□□□ 0.54
CBX4O00257 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.45■□□□□ 0.54
CBX4O00257 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.45■□□□□ 0.54
CBX4O00257 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CBX4O00257 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CBX4O00257 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CBX4O00257 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CBX4O00257 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.45■□□□□ 0.54
CBX4O00257 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.44■□□□□ 0.54
CBX4O00257 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 AC132938.6-201ENST00000623828 1655 ntBASIC18.44■□□□□ 0.54
CBX4O00257 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.44■□□□□ 0.54
CBX4O00257 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.44■□□□□ 0.54
CBX4O00257 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.44■□□□□ 0.54
CBX4O00257 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
CBX4O00257 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.44■□□□□ 0.54
CBX4O00257 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 DRAXINP1-201ENST00000437611 948 ntBASIC18.44■□□□□ 0.54
CBX4O00257 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CBX4O00257 RN7SL606P-201ENST00000472779 293 ntBASIC18.44■□□□□ 0.54
CBX4O00257 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.44■□□□□ 0.54
CBX4O00257 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.44■□□□□ 0.54
CBX4O00257 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.44■□□□□ 0.54
CBX4O00257 TPSP2-201ENST00000561760 610 ntBASIC18.44■□□□□ 0.54
CBX4O00257 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.44■□□□□ 0.54
CBX4O00257 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.44■□□□□ 0.54
CBX4O00257 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
CBX4O00257 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CBX4O00257 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.43■□□□□ 0.54
CBX4O00257 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 AC093010.1-201ENST00000473625 1624 ntBASIC18.43■□□□□ 0.54
CBX4O00257 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
CBX4O00257 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.43■□□□□ 0.54
CBX4O00257 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.43■□□□□ 0.54
CBX4O00257 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CBX4O00257 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.43■□□□□ 0.54
CBX4O00257 TOB2P1-201ENST00000469761 992 ntBASIC18.43■□□□□ 0.54
CBX4O00257 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.43■□□□□ 0.54
CBX4O00257 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.43■□□□□ 0.54
CBX4O00257 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.43■□□□□ 0.54
CBX4O00257 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.43■□□□□ 0.54
CBX4O00257 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.43■□□□□ 0.54
CBX4O00257 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 AC009154.2-201ENST00000621177 724 ntBASIC18.43■□□□□ 0.54
CBX4O00257 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.43■□□□□ 0.54
CBX4O00257 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.43■□□□□ 0.54
CBX4O00257 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.43■□□□□ 0.54
CBX4O00257 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.43■□□□□ 0.54
CBX4O00257 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
CBX4O00257 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.43■□□□□ 0.54
CBX4O00257 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.43■□□□□ 0.54
CBX4O00257 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CBX4O00257 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CBX4O00257 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CBX4O00257 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CBX4O00257 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.42■□□□□ 0.54
CBX4O00257 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms