Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 CFL2-205ENST00000555765 632 ntTSL 2 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 SOX15-203ENST00000570788 1093 ntBASIC13.23□□□□□ -0.29
SMKR1H3BMG3 MIR6821-201ENST00000617625 74 ntBASIC13.23□□□□□ -0.29
SMKR1H3BMG3 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 AC008741.2-201ENST00000612792 3115 ntBASIC13.23□□□□□ -0.29
SMKR1H3BMG3 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
SMKR1H3BMG3 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 CROCCP2-202ENST00000412962 2773 ntBASIC13.22□□□□□ -0.29
SMKR1H3BMG3 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 AL121761.2-201ENST00000598007 1648 ntBASIC13.22□□□□□ -0.29
SMKR1H3BMG3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 Z85996.1-201ENST00000494644 937 ntBASIC13.22□□□□□ -0.29
SMKR1H3BMG3 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 Six3os1_6.1-201ENST00000620790 196 ntBASIC13.22□□□□□ -0.29
SMKR1H3BMG3 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 CES3-203ENST00000543856 3178 ntTSL 2 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
SMKR1H3BMG3 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 BOC-212ENST00000485230 2173 ntTSL 2 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC13.21□□□□□ -0.29
SMKR1H3BMG3 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms