Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 CYB561-217ENST00000582997 877 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 AC017083.2-201ENST00000608069 979 ntBASIC13.9□□□□□ -0.18
COL6A5A8TX70 Six3os1_5.1-201ENST00000611000 271 ntBASIC13.9□□□□□ -0.18
COL6A5A8TX70 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 AC073314.1-201ENST00000568729 2216 ntBASIC13.9□□□□□ -0.18
COL6A5A8TX70 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 FAM8A2P-201ENST00000528813 1142 ntBASIC13.9□□□□□ -0.18
COL6A5A8TX70 MIR4525-201ENST00000580000 75 ntBASIC13.9□□□□□ -0.18
COL6A5A8TX70 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL6A5A8TX70 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 SPTSSB-204ENST00000617024 1292 ntBASIC13.9□□□□□ -0.18
COL6A5A8TX70 MED16-214ENST00000617672 554 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 AL805961.1-202ENST00000641562 540 ntBASIC13.9□□□□□ -0.18
COL6A5A8TX70 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.9□□□□□ -0.18
COL6A5A8TX70 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.19
COL6A5A8TX70 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC13.9□□□□□ -0.19
COL6A5A8TX70 FO538757.1-201ENST00000623083 1397 ntBASIC13.89□□□□□ -0.19
COL6A5A8TX70 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 AC008667.4-201ENST00000607370 168 ntBASIC13.89□□□□□ -0.19
COL6A5A8TX70 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 AC112907.3-201ENST00000577781 2400 ntBASIC13.89□□□□□ -0.19
COL6A5A8TX70 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 IRX1P1-201ENST00000438849 1838 ntBASIC13.89□□□□□ -0.19
COL6A5A8TX70 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC13.89□□□□□ -0.19
COL6A5A8TX70 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL6A5A8TX70 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
COL6A5A8TX70 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC13.88□□□□□ -0.19
COL6A5A8TX70 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms