Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 AC018470.1-201ENST00000624790 3129 ntBASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 KRT18P55-202ENST00000578578 1546 ntBASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 GNAS-203ENST00000306120 1878 ntBASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.01■□□□□ 0.47
VPS9D1Q9Y2B5 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 HLA-DQB1-201ENST00000374943 1656 ntBASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 STARP1-201ENST00000397973 869 ntBASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18■□□□□ 0.47
VPS9D1Q9Y2B5 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 AP000997.3-201ENST00000623333 2250 ntBASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 KRTAP4-4-201ENST00000390661 1081 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 AC024563.2-201ENST00000603282 481 ntBASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VPS9D1Q9Y2B5 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 AC068880.1-201ENST00000507289 2297 ntBASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 PKD1P1-201ENST00000458669 6805 ntBASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 YBX1P2-201ENST00000489612 999 ntBASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 AL441883.1-201ENST00000566170 1045 ntBASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 AL136038.4-201ENST00000603606 1261 ntBASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
VPS9D1Q9Y2B5 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms