Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 CCNC-219ENST00000627680 896 ntTSL 5 BASIC13.98□□□□□ -0.17
NOTCH3Q9UM47 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NOTCH3Q9UM47 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
NOTCH3Q9UM47 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC13.98□□□□□ -0.17
NOTCH3Q9UM47 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NOTCH3Q9UM47 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NOTCH3Q9UM47 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NOTCH3Q9UM47 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
NOTCH3Q9UM47 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 IL9RP2-201ENST00000423948 1312 ntBASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 F11R-206ENST00000621309 4770 ntTSL 5 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 KATNBL1P6-202ENST00000562413 1466 ntBASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 AKR1C7P-201ENST00000305623 895 ntBASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 AF186996.4-201ENST00000467186 377 ntBASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 PPOX-214ENST00000535223 664 ntTSL 3 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 AC011840.4-201ENST00000578471 627 ntBASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC13.97□□□□□ -0.17
NOTCH3Q9UM47 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 AL353692.3-201ENST00000407031 1396 ntBASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 TLE1-202ENST00000376484 666 ntTSL 3 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 MOK-208ENST00000519058 917 ntTSL 2 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 AC092865.5-201ENST00000545435 363 ntBASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 AC099336.1-202ENST00000602961 463 ntBASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
NOTCH3Q9UM47 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
NOTCH3Q9UM47 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
NOTCH3Q9UM47 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
NOTCH3Q9UM47 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC13.96□□□□□ -0.18
NOTCH3Q9UM47 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
NOTCH3Q9UM47 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
NOTCH3Q9UM47 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
NOTCH3Q9UM47 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
NOTCH3Q9UM47 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
NOTCH3Q9UM47 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC13.96□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms