Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.41■□□□□ 0.7
SIX2Q9NPC8 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.4■□□□□ 0.7
SIX2Q9NPC8 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
SIX2Q9NPC8 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.39■□□□□ 0.7
SIX2Q9NPC8 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.39■□□□□ 0.7
SIX2Q9NPC8 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 AC004263.2-201ENST00000617183 678 ntBASIC19.39■□□□□ 0.69
SIX2Q9NPC8 HYMAI.1-201ENST00000620949 238 ntBASIC19.39■□□□□ 0.69
SIX2Q9NPC8 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 KRT8P47-201ENST00000604727 1398 ntBASIC19.39■□□□□ 0.69
SIX2Q9NPC8 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SIX2Q9NPC8 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.38■□□□□ 0.69
SIX2Q9NPC8 AL355312.1-201ENST00000407115 2176 ntBASIC19.37■□□□□ 0.69
SIX2Q9NPC8 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SIX2Q9NPC8 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms