Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GUSBP12-201ENST00000513727 720 ntBASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
TRIM39Q9HCM9 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 IGHV3-41-201ENST00000613121 348 ntBASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
TRIM39Q9HCM9 PHGDH-209ENST00000641074 1780 ntBASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 NPAP1P7-201ENST00000613027 823 ntBASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 LINC00602-201ENST00000629776 2065 ntBASIC17.91■□□□□ 0.46
TRIM39Q9HCM9 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 TSPY12P-201ENST00000421279 868 ntBASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 AP002383.4-201ENST00000442518 975 ntBASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TRIM39Q9HCM9 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms