Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PCDH9Q9HC56 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 RCN1P1-201ENST00000400413 996 ntBASIC18.7■□□□□ 0.58
PCDH9Q9HC56 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 BX664615.1-201ENST00000443558 458 ntBASIC18.7■□□□□ 0.58
PCDH9Q9HC56 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 COX11P1-201ENST00000489116 835 ntBASIC18.7■□□□□ 0.58
PCDH9Q9HC56 AC104390.1-201ENST00000555663 520 ntBASIC18.7■□□□□ 0.58
PCDH9Q9HC56 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 AL024508.2-201ENST00000607749 1894 ntBASIC18.7■□□□□ 0.58
PCDH9Q9HC56 AC024243.1-201ENST00000609234 778 ntBASIC18.7■□□□□ 0.58
PCDH9Q9HC56 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 AC092865.7-201ENST00000641832 219 ntBASIC18.7■□□□□ 0.58
PCDH9Q9HC56 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.7■□□□□ 0.58
PCDH9Q9HC56 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 AC140113.3-201ENST00000605663 199 ntBASIC18.69■□□□□ 0.58
PCDH9Q9HC56 AL023973.1-201ENST00000624619 620 ntBASIC18.69■□□□□ 0.58
PCDH9Q9HC56 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PCDH9Q9HC56 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.68■□□□□ 0.58
PCDH9Q9HC56 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms