Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 AL031008.1-201ENST00000619963 541 ntBASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.8■□□□□ 0.76
TRAIPQ9BWF2 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 AC106795.1-205ENST00000512851 1056 ntBASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 IGHV3OR16-7-201ENST00000604106 360 ntBASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 AC007613.1-201ENST00000572811 2597 ntBASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.79■□□□□ 0.76
TRAIPQ9BWF2 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 AC005082.1-201ENST00000413042 2259 ntBASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 WIZP1-201ENST00000531444 2299 ntBASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.78■□□□□ 0.76
TRAIPQ9BWF2 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 AC079781.3-201ENST00000449110 356 ntBASIC19.77■□□□□ 0.76
TRAIPQ9BWF2 AC068472.1-201ENST00000474589 881 ntBASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms