Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 ZNF444P1-201ENST00000559497 298 ntBASIC14.01□□□□□ -0.17
CCDC140Q96MF4 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.01□□□□□ -0.17
CCDC140Q96MF4 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 GATB-213ENST00000515812 1893 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 HLA-DQB1-201ENST00000374943 1656 ntBASIC14.01□□□□□ -0.17
CCDC140Q96MF4 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC14.01□□□□□ -0.17
CCDC140Q96MF4 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC14□□□□□ -0.17
CCDC140Q96MF4 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14□□□□□ -0.17
CCDC140Q96MF4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC14□□□□□ -0.17
CCDC140Q96MF4 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14□□□□□ -0.17
CCDC140Q96MF4 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14□□□□□ -0.17
CCDC140Q96MF4 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC14□□□□□ -0.17
CCDC140Q96MF4 SAPCD2P2-201ENST00000431719 1174 ntBASIC14□□□□□ -0.17
CCDC140Q96MF4 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 DUTP2-201ENST00000519164 463 ntBASIC14□□□□□ -0.17
CCDC140Q96MF4 MNT-208ENST00000575394 606 ntTSL 4 BASIC14□□□□□ -0.17
CCDC140Q96MF4 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14□□□□□ -0.17
CCDC140Q96MF4 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC14□□□□□ -0.17
CCDC140Q96MF4 AC004263.2-201ENST00000617183 678 ntBASIC14□□□□□ -0.17
CCDC140Q96MF4 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14□□□□□ -0.17
CCDC140Q96MF4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC14□□□□□ -0.17
CCDC140Q96MF4 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC14□□□□□ -0.17
CCDC140Q96MF4 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CCDC140Q96MF4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC14□□□□□ -0.17
CCDC140Q96MF4 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14□□□□□ -0.17
CCDC140Q96MF4 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC14□□□□□ -0.17
CCDC140Q96MF4 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 IGHGP-201ENST00000390555 1178 ntBASIC13.99□□□□□ -0.17
CCDC140Q96MF4 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 SLC25A6P5-201ENST00000435663 894 ntBASIC13.99□□□□□ -0.17
CCDC140Q96MF4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 AP003733.1-201ENST00000491725 852 ntBASIC13.99□□□□□ -0.17
CCDC140Q96MF4 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 PPOX-214ENST00000535223 664 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 AL049597.2-201ENST00000565575 961 ntBASIC13.99□□□□□ -0.17
CCDC140Q96MF4 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
CCDC140Q96MF4 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms