Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.36■□□□□ 0.53
CHFRQ96EP1 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 TERC-201ENST00000602385 541 ntBASIC18.36■□□□□ 0.53
CHFRQ96EP1 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CHFRQ96EP1 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CHFRQ96EP1 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHFRQ96EP1 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHFRQ96EP1 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHFRQ96EP1 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHFRQ96EP1 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHFRQ96EP1 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHFRQ96EP1 AC104109.2-201ENST00000602919 1418 ntBASIC18.35■□□□□ 0.53
CHFRQ96EP1 RPS2P28-201ENST00000314255 741 ntBASIC18.35■□□□□ 0.53
CHFRQ96EP1 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHFRQ96EP1 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 AC034105.1-201ENST00000563488 319 ntBASIC18.35■□□□□ 0.53
CHFRQ96EP1 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHFRQ96EP1 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHFRQ96EP1 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 AL356309.3-201ENST00000624132 1934 ntBASIC18.35■□□□□ 0.53
CHFRQ96EP1 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CHFRQ96EP1 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.35■□□□□ 0.53
CHFRQ96EP1 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.34■□□□□ 0.53
CHFRQ96EP1 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.34■□□□□ 0.53
CHFRQ96EP1 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHFRQ96EP1 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHFRQ96EP1 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.34■□□□□ 0.53
CHFRQ96EP1 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHFRQ96EP1 ZNF259P1-201ENST00000407656 1365 ntBASIC18.34■□□□□ 0.53
CHFRQ96EP1 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHFRQ96EP1 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.34■□□□□ 0.53
CHFRQ96EP1 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.34■□□□□ 0.53
CHFRQ96EP1 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHFRQ96EP1 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CHFRQ96EP1 AP000867.4-201ENST00000641616 219 ntBASIC18.34■□□□□ 0.53
CHFRQ96EP1 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHFRQ96EP1 BX323043.1-201ENST00000641006 1765 ntBASIC18.34■□□□□ 0.53
CHFRQ96EP1 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.34■□□□□ 0.53
CHFRQ96EP1 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CHFRQ96EP1 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHFRQ96EP1 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CHFRQ96EP1 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHFRQ96EP1 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHFRQ96EP1 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHFRQ96EP1 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.33■□□□□ 0.53
CHFRQ96EP1 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHFRQ96EP1 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.33■□□□□ 0.53
CHFRQ96EP1 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
CHFRQ96EP1 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
CHFRQ96EP1 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHFRQ96EP1 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHFRQ96EP1 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.33■□□□□ 0.52
CHFRQ96EP1 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHFRQ96EP1 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.33■□□□□ 0.52
CHFRQ96EP1 AC098831.1-202ENST00000438821 336 ntBASIC18.33■□□□□ 0.52
CHFRQ96EP1 NKAPP1-205ENST00000585790 367 ntBASIC18.33■□□□□ 0.52
CHFRQ96EP1 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.33■□□□□ 0.52
CHFRQ96EP1 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
CHFRQ96EP1 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.33■□□□□ 0.52
CHFRQ96EP1 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CHFRQ96EP1 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.33■□□□□ 0.52
CHFRQ96EP1 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHFRQ96EP1 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHFRQ96EP1 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.33■□□□□ 0.52
CHFRQ96EP1 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CHFRQ96EP1 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.32■□□□□ 0.52
CHFRQ96EP1 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CHFRQ96EP1 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms