Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.42□□□□□ -0.1
RPUSD4Q96CM3 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 AL513477.1-201ENST00000602865 2407 ntBASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 KLF2-202ENST00000592003 564 ntTSL 3 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 AC104771.1-201ENST00000603335 964 ntBASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 UBALD1-205ENST00000590891 2641 ntBASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 AL391005.1-201ENST00000623953 2435 ntBASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
RPUSD4Q96CM3 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 HEIH-201ENST00000623091 1652 ntBASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 POM121L13P-201ENST00000422362 380 ntBASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 RHOD-202ENST00000532559 538 ntTSL 3 BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 AC142086.2-201ENST00000569753 217 ntBASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 AL023806.1-201ENST00000603994 1649 ntBASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 FLJ13224-201ENST00000313737 1514 ntBASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
RPUSD4Q96CM3 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 CICP6-201ENST00000457191 2729 ntBASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.39□□□□□ -0.11
RPUSD4Q96CM3 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms