Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC18.44■□□□□ 0.54
SHROOM3Q8TF72 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 MIR662-201ENST00000384847 95 ntBASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
SHROOM3Q8TF72 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 IGHGP-201ENST00000390555 1178 ntBASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 RN7SL510P-201ENST00000581311 263 ntBASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SHROOM3Q8TF72 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.41■□□□□ 0.54
SHROOM3Q8TF72 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms