Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 AC073648.2-201ENST00000510116 352 ntBASIC17.59■□□□□ 0.41
LMX1AQ8TE12 RNA5SP419-201ENST00000515908 135 ntBASIC17.59■□□□□ 0.41
LMX1AQ8TE12 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 AP001269.4-201ENST00000609611 512 ntBASIC17.59■□□□□ 0.41
LMX1AQ8TE12 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
LMX1AQ8TE12 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LMX1AQ8TE12 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LMX1AQ8TE12 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
LMX1AQ8TE12 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
LMX1AQ8TE12 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LMX1AQ8TE12 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LMX1AQ8TE12 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.58■□□□□ 0.41
LMX1AQ8TE12 SLC25A24-204ENST00000569674 2357 ntBASIC17.58■□□□□ 0.41
LMX1AQ8TE12 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
LMX1AQ8TE12 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.58■□□□□ 0.4
LMX1AQ8TE12 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 IL9RP2-201ENST00000423948 1312 ntBASIC17.58■□□□□ 0.4
LMX1AQ8TE12 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 FGFR3P6-201ENST00000457012 610 ntBASIC17.58■□□□□ 0.4
LMX1AQ8TE12 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 RNPS1P1-201ENST00000507437 918 ntBASIC17.58■□□□□ 0.4
LMX1AQ8TE12 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 AC126763.1-201ENST00000552015 2118 ntBASIC17.58■□□□□ 0.4
LMX1AQ8TE12 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LMX1AQ8TE12 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 SCARNA2-201ENST00000458748 420 ntBASIC17.57■□□□□ 0.4
LMX1AQ8TE12 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 AF228730.7-201ENST00000641842 219 ntBASIC17.57■□□□□ 0.4
LMX1AQ8TE12 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LMX1AQ8TE12 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 ESPNP-201ENST00000270691 2015 ntBASIC17.56■□□□□ 0.4
LMX1AQ8TE12 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.56■□□□□ 0.4
LMX1AQ8TE12 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms