Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.37■■□□□ 1.01
SMC1BQ8NDV3 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 TFAMP1-201ENST00000412727 736 ntBASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 DUX4L27-201ENST00000554796 1261 ntBASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SMC1BQ8NDV3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 BCAR1-209ENST00000546196 1340 ntBASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 BASP1P1-201ENST00000430708 665 ntBASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 TSPY16P-201ENST00000449843 468 ntBASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 KRT19P2-202ENST00000557173 1012 ntBASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SMC1BQ8NDV3 TEX21P-204ENST00000641479 1693 ntBASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 AC004817.3-201ENST00000602957 2129 ntBASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 GRAP-202ENST00000395635 834 ntTSL 2 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 ELK2BP-201ENST00000415014 1224 ntBASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 IGHV3-65-201ENST00000523210 341 ntBASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 NOP2-220ENST00000545915 630 ntTSL 2 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 AC091812.2-201ENST00000619081 385 ntBASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 AC004706.3-202ENST00000621574 984 ntBASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 AC004790.2-201ENST00000623588 572 ntBASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 AC068587.9-201ENST00000641814 219 ntBASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 PMPCAP1-201ENST00000508114 1576 ntBASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SMC1BQ8NDV3 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms