Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 TEN1-204ENST00000588202 862 ntTSL 3 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 WDR6-223ENST00000627177 207 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 AL136038.3-201ENST00000561909 1096 ntBASIC21.83■■□□□ 1.09
VPS53Q5VIR6 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.83■■□□□ 1.09
VPS53Q5VIR6 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 AL121956.5-201ENST00000625261 221 ntBASIC21.83■■□□□ 1.09
VPS53Q5VIR6 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
VPS53Q5VIR6 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VPS53Q5VIR6 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VPS53Q5VIR6 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
VPS53Q5VIR6 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 FXN-203ENST00000396366 922 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 AC024563.2-201ENST00000603282 481 ntBASIC21.82■■□□□ 1.08
VPS53Q5VIR6 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 AC008764.6-201ENST00000595909 2069 ntBASIC21.82■■□□□ 1.08
VPS53Q5VIR6 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
VPS53Q5VIR6 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 NT5C-211ENST00000582170 653 ntTSL 3 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
VPS53Q5VIR6 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms